WDR43

This analysis report summarizes WDR43 eCLIP data from ENCODE. The current tab provides an overview of the results, and the other tabs list identified peaks and motifs.

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Experiment Summary

Experiment ID	File ID	Sample	Antibody source	Antibody ID	Antibody lot	Release date	Laboratory	Number of peaks
ENCSR085JPB	ENCFF945NFS	HepG2	Bethyl Labs	A302-478A	1	2018-08-30	Gene Yeo, UCSD	192
ENCSR349CMI	ENCFF244JER	K562	Bethyl Labs	A302-478A	1	2018-08-30	Gene Yeo, UCSD	139

WDR43 Peak Assignments

The following plots show the assignment of peaks into different genic features:

Introns contain other subdivisions, please see the subsequent plot for a breakdown of those features.

This plot is interactive. You can hover over the bars to see the percentage and number of identified peaks. You can select which features to show by toggling the region names in the legend, and you can download the plot by moving your mouse to the top of the plot and clicking on the camera icon.

WDR43 Intron Assignments

The following plots show the assignment of peaks into different intronic features:

5’ splice site: the peak is within the first 100 bp of an intron (5’ to 3’ direction
3’ splice site: the peak is within the last 100 bp of an intron (5’ to 3’ direction)
Proximal intron: the peak is within 100 bp to 500 bp of the nearest exon
Distal intron: greater than 500 bp away from the nearest exon

WDR43 Motifs

The following plot shows a summary of the top five motifs by significance in each experiment. Motifs were detected with varying length parameters, you may observe a similar motif with different number of bases included multiple times. A motif present in more peaks and with a higher significance will be in the upper right quadrant of the plot, while the lower left quadrant has motifs that are less significant and in fewer peaks.

The following tables contain called WDR43 peaks. To identify peaks, clusters (regions of read enrichment) in the immunoprecipitated (IP) samples were found using the peak calling tool CLIPper. To account for background signal, a cluster was identified as a peak if the log₂ fold enrichment over input was ≥ 3 and the p-value ≤ 0.001.

Peaks were annotated using transcript information from GENCODE. Each annotated peak is labeled with specific annotation feature types, first split by coding and non-coding transcripts, then by transcript regions, and then by intron/exon proximity regions. For overlapping transcript regions, the following hierarchy is used to label the region: coding sequence (CDS), 5’ or 3’ untranslated region (UTR), intron, non-coding exon, then non-coding intron. For example, if a peak is in the 5’ UTR of one transcript that overlaps an intron of another transcript, the peak region will be labeled as 5’ UTR. All gene annotations are from GENCODE release v41.

The following columns are included in the tables:

Chromosome: chromosome where the peak is located.
Peak start: start coordinate for the peak.
Peak stop: stop coordinate for the peak.
Strand: strand of DNA where the peak was called.
-log₁₀(p-value): significance of the cluster call by CLIPper. Values are log transformed so a larger number indicates a greater significance.
log₂(fold change): log transformed fold enrichment of the IP signal over a matched input.
Gene name: name (symbol) of the gene that overlaps with the peak.
Ensembl ID: unique identifer of the gene that overlaps with the peak.
Feature: which part of the listed gene overlaps with the peak.

Please note, this table is interactive. You can search for specific genes or features, and can sort the table by any of the columns.

ENCSR085JPB (HepG2) Peaks

Chromosome	Peak start	Peak stop	Strand	-log₁₀(p-value)	log₂(fold change)	Gene name	Ensembl ID	Feature
chr19	56,814,216	56,814,254	-	5.433	3.194	PEG3	ENSG00000198300.14	CDS
chr15	25,085,485	25,085,555	+	9.069	3.835	SNHG14	ENSG00000224078.15	ncRNA
chr15	25,085,555	25,085,697	+	12.555	3.118	SNHG14	ENSG00000224078.15	ncRNA
chr14	39,179,202	39,179,247	+	6.339	3.200	PNN	ENSG00000100941.9	CDS
chr3	58,094,930	58,094,955	+	3.701	3.025	FLNB	ENSG00000136068.16	CDS
chr2	231,461,594	231,461,673	-	8.551	3.787	NCL	ENSG00000115053.17	CDS
chrX	129,511,921	129,511,964	-	4.590	4.655	SMARCA1	ENSG00000102038.16	CDS
chr14	23,644,831	23,644,863	+	8.342	3.258	DHRS2	ENSG00000100867.15	CDS
chr17	28,723,430	28,723,490	+	12.693	3.278	SNORD42A	ENSG00000238649.1	ncRNA
chr21	8,218,746	8,218,749	+	65.041	4.551	ENSG00000278996	ENSG00000278996.1	ncRNA
chr14	102,085,371	102,085,423	-	4.134	3.182	HSP90AA1	ENSG00000080824.19	CDS
chr4	1,804,891	1,804,931	+	4.964	4.713	FGFR3	ENSG00000068078.20	CDS
chr7	149,020,966	149,020,976	-	3.861	3.746	PDIA4	ENSG00000155660.11	CDS
chr2	231,460,667	231,460,703	-	5.056	3.538	NCL	ENSG00000115053.17	CDS
chr16	2,764,592	2,764,638	+	6.073	3.168	SRRM2	ENSG00000167978.17	CDS
chr10	100,237,049	100,237,090	-	11.386	4.215	CWF19L1	ENSG00000095485.18	3' splice site
chr16	28,835,155	28,835,188	+	5.056	3.224	ATXN2L	ENSG00000168488.19	CDS
chr17	19,188,107	19,188,117	+	400.000	4.356	SNORD3A	ENSG00000263934.5	ncRNA
chr17	19,188,104	19,188,107	+	400.000	4.296	SNORD3A	ENSG00000263934.5	ncRNA
chr17	19,188,117	19,188,123	+	400.000	3.385	SNORD3A	ENSG00000263934.5	ncRNA
chr7	149,014,907	149,014,940	-	4.457	3.363	PDIA4	ENSG00000155660.11	CDS
chr2	101,829,548	101,829,595	+	4.313	3.663	MAP4K4	ENSG00000071054.17	CDS
chr1	1,044,206	1,044,261	+	3.330	3.117	AGRN	ENSG00000188157.15	CDS
chr8	123,369,074	123,369,177	-	3.911	3.606	ATAD2	ENSG00000156802.13	CDS
chr20	26,209,367	26,209,396	-	6.686	5.382	MIR663AHG	ENSG00000227195.11	ncRNA
chr20	26,209,353	26,209,367	-	7.125	4.635	MIR663AHG	ENSG00000227195.11	ncRNA
chr3	58,098,710	58,098,766	+	6.018	3.610	FLNB	ENSG00000136068.16	CDS
chr14	31,135,123	31,135,187	-	5.231	3.564	HECTD1	ENSG00000092148.14	CDS
chr1	244,858,217	244,858,268	-	3.701	3.219	HNRNPU	ENSG00000153187.20	CDS
chr20	26,209,337	26,209,353	-	27.301	5.763	MIR663AHG	ENSG00000227195.11	ncRNA
chr20	26,209,305	26,209,337	-	25.986	5.601	MIR663AHG	ENSG00000227195.11	ncRNA
chr1	19,157,814	19,157,851	-	3.753	3.299	UBR4	ENSG00000127481.15	CDS
chr16	89,200,006	89,200,040	-	3.701	3.175	SLC22A31	ENSG00000259803.8	5' UTR
chr16	1,965,193	1,965,304	+	9.716	3.287	SNORA78\|SNHG9	ENSG00000273587.1\|\|ENSG00000255198.6	ncRNA
chr9	114,252,593	114,252,642	+	6.971	3.736	COL27A1	ENSG00000196739.15	CDS
chr8	98,825,411	98,825,443	-	6.686	5.114	STK3	ENSG00000104375.17	5' splice site
chr20	62,330,488	62,330,511	-	4.519	3.322	LAMA5	ENSG00000130702.15	CDS
chr9	128,611,745	128,611,846	+	4.011	3.024	SPTAN1	ENSG00000197694.18	CDS
chr1	244,855,586	244,855,609	-	3.468	3.489	HNRNPU	ENSG00000153187.20	CDS
chr2	231,460,478	231,460,492	-	9.341	4.609	NCL	ENSG00000115053.17	CDS
chr2	231,460,492	231,460,537	-	14.702	4.398	NCL	ENSG00000115053.17	CDS
chr2	231,460,537	231,460,564	-	7.878	3.608	NCL	ENSG00000115053.17	CDS
chr9	114,235,598	114,235,653	+	8.963	3.058	COL27A1	ENSG00000196739.15	CDS
chr14	21,392,148	21,392,187	-	7.462	3.679	SNORD9	ENSG00000199436.1	ncRNA
chr1	19,157,926	19,157,967	-	4.590	4.606	UBR4	ENSG00000127481.15	CDS
chr12	103,947,631	103,947,640	+	3.648	3.009	HSP90B1	ENSG00000166598.16	CDS
chr11	130,143,388	130,143,424	+	3.861	3.552	APLP2	ENSG00000084234.18	CDS
chr16	78,213,933	78,213,959	+	3.330	3.161	WWOX	ENSG00000186153.18	Distal intron
chr1	19,197,159	19,197,227	-	6.073	3.079	UBR4	ENSG00000127481.15	CDS
chr20	62,338,568	62,338,604	-	5.056	3.118	LAMA5	ENSG00000130702.15	CDS
chr2	27,383,521	27,383,602	-	4.842	3.647	PPM1G	ENSG00000115241.11	CDS
chr1	171,542,087	171,542,199	+	3.378	3.071	PRRC2C	ENSG00000117523.18	CDS
chr6	144,437,710	144,437,746	+	4.177	3.009	UTRN	ENSG00000152818.19	CDS
chr9	114,265,098	114,265,110	+	3.080	3.474	COL27A1	ENSG00000196739.15	CDS
chr9	114,310,557	114,310,618	+	7.106	3.231	COL27A1	ENSG00000196739.15	CDS
chrX	20,136,114	20,136,205	-	20.188	4.846	ENSG00000201882	ENSG00000201882.1	ncRNA
chr9	128,618,932	128,619,003	+	3.330	3.117	SPTAN1	ENSG00000197694.18	CDS
chrX	53,562,853	53,562,925	-	3.701	3.175	HUWE1	ENSG00000086758.16	CDS
chr4	173,331,981	173,332,076	-	10.568	4.014	HMGB2	ENSG00000164104.12	3' UTR
chr2	54,622,343	54,622,392	+	5.433	3.194	SPTBN1	ENSG00000115306.16	CDS
chr6	52,278,743	52,278,814	-	5.813	3.267	MCM3	ENSG00000112118.20	CDS
chr1	19,148,562	19,148,616	-	4.379	3.139	UBR4	ENSG00000127481.15	CDS
chr9	114,169,102	114,169,183	+	8.842	3.017	COL27A1	ENSG00000196739.15	CDS
chr1	19,161,042	19,161,093	-	4.719	3.767	UBR4	ENSG00000127481.15	CDS
chr21	45,468,256	45,468,304	+	5.510	3.263	COL18A1	ENSG00000182871.16	CDS
chr22	36,510,876	36,510,963	-	3.694	4.231	EIF3D	ENSG00000100353.18	3' UTR
chr19	56,813,967	56,814,031	-	5.056	3.424	PEG3	ENSG00000198300.14	CDS
chrX	53,554,822	53,554,905	-	4.077	3.313	HUWE1	ENSG00000086758.16	CDS
chr7	103,989,284	103,989,314	-	4.259	3.804	RELN	ENSG00000189056.15	CDS
chr14	101,985,825	101,985,918	+	4.964	4.845	DYNC1H1	ENSG00000197102.14	CDS
chr9	114,231,822	114,231,859	+	4.684	3.215	COL27A1	ENSG00000196739.15	CDS
chr14	39,179,322	39,179,338	+	4.313	3.760	PNN	ENSG00000100941.9	CDS
chr1	112,689,431	112,689,485	+	3.737	4.363	MOV10	ENSG00000155363.19	CDS
chr1	173,865,911	173,865,959	-	5.026	3.261	GAS5	ENSG00000234741.10	ncRNA
chr3	48,414,984	48,415,035	-	4.660	3.937	PLXNB1	ENSG00000164050.13	CDS
chr16	2,770,263	2,770,307	+	5.688	3.014	SRRM2	ENSG00000167978.17	3' splice site
chr1	244,864,287	244,864,372	-	5.301	3.492	HNRNPU	ENSG00000153187.20	CDS
chr1	90,657,868	90,657,885	+	13.962	5.398	SNORD3G	ENSG00000199666.2	ncRNA
chr1	90,657,885	90,657,897	+	13.962	5.385	SNORD3G	ENSG00000199666.2	ncRNA
chr1	35,187,201	35,187,250	-	4.313	3.804	SFPQ	ENSG00000116560.12	CDS
chr9	114,311,649	114,311,733	+	12.362	4.137	COL27A1	ENSG00000196739.15	3' UTR
chr20	62,338,229	62,338,265	-	6.073	3.294	LAMA5	ENSG00000130702.15	CDS
chr19	51,353,122	51,353,207	-	5.129	3.224	ETFB	ENSG00000105379.10	CDS
chr2	54,647,154	54,647,259	+	11.615	3.649	SPTBN1	ENSG00000115306.16	CDS
chr4	52,712,708	52,712,739	+	14.616	6.220	hsa-mir-4449	MI0016792	miRNA
chr20	44,401,310	44,401,409	+	7.845	3.179	HNF4A	ENSG00000101076.20	CDS
chr9	128,689,357	128,689,430	+	4.538	4.655	SET	ENSG00000119335.18	5' UTR
chr17	77,488,243	77,488,294	+	5.231	3.453	SEPTIN9	ENSG00000184640.20	CDS
chr9	712,516	712,577	+	4.313	3.845	KANK1	ENSG00000107104.21	CDS
chr11	93,721,668	93,721,726	+	17.821	3.737	SCARNA9	ENSG00000254911.3	ncRNA
chr1	19,156,908	19,156,924	-	4.162	4.432	UBR4	ENSG00000127481.15	CDS
chr20	35,721,786	35,721,830	-	6.500	3.747	RBM39	ENSG00000131051.24	CDS
chr1	173,866,307	173,866,353	-	11.591	3.662	GAS5	ENSG00000234741.10	ncRNA
chr10	99,843,878	99,843,900	+	4.908	3.702	ABCC2	ENSG00000023839.12	CDS
chr12	103,947,365	103,947,420	+	9.661	3.623	HSP90B1	ENSG00000166598.16	CDS
chr17	1,681,889	1,681,974	-	5.301	3.453	PRPF8	ENSG00000174231.17	CDS
chr9	114,167,781	114,167,816	+	5.813	3.300	COL27A1	ENSG00000196739.15	CDS
chr3	184,327,234	184,327,326	+	5.392	5.009	EIF4G1	ENSG00000114867.22	CDS
chr6	144,424,065	144,424,078	+	4.908	3.449	UTRN	ENSG00000152818.19	CDS
chr2	231,461,886	231,461,962	-	5.842	3.210	NCL	ENSG00000115053.17	CDS
chr19	56,813,902	56,813,960	-	7.099	3.104	PEG3	ENSG00000198300.14	CDS
chr12	6,510,500	6,510,546	+	32.148	3.157	ENSG00000276232\|SCARNA10	ENSG00000276232.1\|\|ENSG00000239002.3	ncRNA
chr9	128,594,270	128,594,378	+	5.822	5.024	SPTAN1	ENSG00000197694.18	CDS
chr6	44,252,146	44,252,189	+	10.716	3.020	HSP90AB1	ENSG00000096384.20	CDS
chr17	19,190,109	19,190,192	-	52.754	5.329	SNORD3C	ENSG00000264940.5	ncRNA
chr21	8,401,804	8,401,837	+	85.177	6.877	ENSG00000280441	ENSG00000280441.3	ncRNA
chr21	8,401,780	8,401,804	+	82.487	6.826	ENSG00000280441	ENSG00000280441.3	ncRNA
chr17	19,062,087	19,062,136	+	7.992	6.036	SNORD3B-1	ENSG00000265185.6	ncRNA
chr17	19,188,097	19,188,100	+	400.000	4.352	SNORD3A	ENSG00000263934.5	ncRNA
chr17	19,188,100	19,188,104	+	400.000	4.339	SNORD3A	ENSG00000263934.5	ncRNA
chr17	19,188,074	19,188,097	+	400.000	4.259	SNORD3A	ENSG00000263934.5	ncRNA
chr1	19,117,858	19,117,909	-	4.077	3.228	UBR4	ENSG00000127481.15	CDS
chr16	31,190,312	31,190,399	+	4.095	3.060	FUS	ENSG00000089280.19	CDS
chr9	114,288,709	114,288,751	+	7.125	4.300	COL27A1	ENSG00000196739.15	CDS
chr14	102,084,695	102,084,753	-	3.861	3.863	HSP90AA1	ENSG00000080824.19	CDS
chr17	76,561,641	76,561,704	+	20.973	3.130	SNORD1A\|SNHG16	ENSG00000278261.1\|\|ENSG00000163597.17	ncRNA
chr2	54,629,063	54,629,125	+	8.258	3.297	SPTBN1	ENSG00000115306.16	CDS
chr2	219,568,184	219,568,246	-	3.753	3.128	OBSL1	ENSG00000124006.15	CDS
chr17	28,676,253	28,676,396	+	4.134	3.182	SUPT6H	ENSG00000109111.15	CDS
chr8	144,096,336	144,096,399	+	4.752	3.038	CYC1	ENSG00000179091.5	CDS
chr21	45,509,469	45,509,514	+	5.882	3.997	COL18A1	ENSG00000182871.16	CDS
chr3	168,032,524	168,032,593	-	3.315	4.287	GOLIM4	ENSG00000173905.9	CDS
chr2	219,571,084	219,571,158	-	5.623	3.534	OBSL1	ENSG00000124006.15	CDS
chr16	30,076,352	30,076,423	+	3.080	3.571	PPP4C	ENSG00000149923.14	CDS
chr11	76,883,398	76,883,410	+	23.875	5.827	ACER3	ENSG00000078124.13	Distal intron
chr11	76,883,410	76,883,420	+	23.875	5.827	ACER3	ENSG00000078124.13	Distal intron
chr3	49,684,807	49,684,874	-	3.514	3.543	MST1	ENSG00000173531.16	CDS
chr17	82,050,125	82,050,217	-	4.719	3.813	RFNG	ENSG00000169733.12	Proximal intron
chr2	231,455,231	231,455,268	-	5.959	3.195	NCL	ENSG00000115053.17	CDS
chr7	2,363,631	2,363,715	+	4.538	4.552	EIF3B	ENSG00000106263.19	CDS
chr1	244,863,800	244,863,891	-	5.433	3.638	HNRNPU	ENSG00000153187.20	CDS
chr11	68,043,348	68,043,485	+	4.259	3.760	TCIRG1	ENSG00000110719.11	CDS
chr1	19,148,031	19,148,086	-	4.134	3.313	UBR4	ENSG00000127481.15	CDS
chr17	39,461,527	39,461,606	+	6.500	3.747	CDK12	ENSG00000167258.15	5' UTR
chr2	54,629,599	54,629,661	+	6.848	3.309	SPTBN1	ENSG00000115306.16	CDS
chr16	2,764,013	2,764,056	+	8.546	4.100	SRRM2	ENSG00000167978.17	CDS
chr2	231,461,820	231,461,862	-	4.077	3.352	NCL	ENSG00000115053.17	CDS
chr20	62,338,286	62,338,334	-	5.882	4.183	LAMA5	ENSG00000130702.15	CDS
chr6	26,157,059	26,157,090	+	5.205	3.391	H1-4	ENSG00000168298.7	3' UTR
chr14	102,082,392	102,082,446	-	3.593	3.559	HSP90AA1	ENSG00000080824.19	CDS
chr20	62,338,477	62,338,508	-	4.077	3.657	LAMA5	ENSG00000130702.15	CDS
chr12	49,272,918	49,272,977	+	3.276	4.287	TUBA1C	ENSG00000167553.17	CDS
chr20	64,273,448	64,273,560	+	3.315	4.155	PCMTD2	ENSG00000203880.13	CDS
chr14	23,323,027	23,323,059	+	3.701	3.078	PABPN1\|BCL2L2-PABPN1	ENSG00000100836.11\|\|ENSG00000258643.6	CDS
chr7	149,005,165	149,005,183	-	3.468	3.683	PDIA4	ENSG00000155660.11	CDS
chr20	32,435,091	32,435,131	+	3.911	3.606	ASXL1	ENSG00000171456.21	CDS
chr1	35,187,074	35,187,129	-	4.719	3.857	SFPQ	ENSG00000116560.12	CDS
chr2	11,615,199	11,615,237	+	3.694	4.300	GREB1	ENSG00000196208.14	CDS
chr16	70,662,671	70,662,721	-	3.701	3.299	MTSS2	ENSG00000132613.16	3' UTR
chr20	62,328,868	62,328,897	-	3.468	3.543	LAMA5	ENSG00000130702.15	CDS
chrX	71,297,868	71,297,939	+	4.457	3.278	NONO	ENSG00000147140.17	CDS
chr9	114,311,183	114,311,250	+	5.957	3.210	COL27A1	ENSG00000196739.15	3' UTR
chr11	17,075,787	17,075,792	-	39.888	3.063	SNORD14B	ENSG00000201403.1	ncRNA
chr5	139,325,513	139,325,657	+	5.056	3.118	MATR3	ENSG00000015479.20\|\|ENSG00000280987.4	CDS
chr14	19,097,905	19,097,970	+	3.080	3.800	DUXAP9	ENSG00000225210.10	ncRNA
chr11	130,141,945	130,142,032	+	6.097	3.878	APLP2	ENSG00000084234.18	CDS
chr17	82,013,731	82,013,800	+	7.125	4.300	ASPSCR1	ENSG00000169696.16	Distal intron
chr9	114,167,841	114,167,867	+	5.698	3.671	COL27A1	ENSG00000196739.15	CDS
chr20	62,310,274	62,310,304	-	4.457	3.322	LAMA5	ENSG00000130702.15	CDS
chr21	8,213,738	8,213,779	+	8.521	5.748	ENSG00000278996	ENSG00000278996.1	ncRNA
chr1	39,576,102	39,576,158	-	3.737	4.363	PABPC4	ENSG00000090621.15	5' UTR
chr20	62,338,095	62,338,150	-	8.963	3.038	LAMA5	ENSG00000130702.15	CDS
chr1	8,866,278	8,866,299	-	6.196	3.483	ENO1	ENSG00000074800.16	CDS
chr17	43,533,958	43,533,985	-	3.701	3.025	ETV4	ENSG00000175832.13	CDS
chr17	19,112,563	19,112,613	-	16.804	4.933	SNORD3D\|ENSG00000262202	ENSG00000262202.4\|\|ENSG00000277947.1\|\|ENSG00000281000.1	ncRNA
chr16	89,892,748	89,892,788	+	3.276	4.224	TCF25	ENSG00000141002.20	Proximal intron
chr17	82,235,980	82,236,078	+	12.452	3.200	SLC16A3	ENSG00000141526.18	CDS
chr1	244,855,900	244,855,941	-	5.472	3.995	HNRNPU	ENSG00000153187.20	CDS
chr14	21,078,425	21,078,490	+	3.861	3.552	ARHGEF40	ENSG00000165801.10	CDS
chr1	67,415,169	67,415,239	-	4.114	4.369	SERBP1	ENSG00000142864.15	CDS
chr17	7,179,020	7,179,090	-	7.483	3.131	ASGR1	ENSG00000141505.12	5' UTR
chr7	103,636,365	103,636,397	-	3.514	3.593	RELN	ENSG00000189056.15	CDS
chr14	102,083,117	102,083,180	-	3.468	4.017	HSP90AA1	ENSG00000080824.19	CDS
chr17	82,232,933	82,232,975	+	3.911	3.746	SLC16A3	ENSG00000141526.18	Distal intron
chr17	29,165,964	29,166,092	-	3.122	3.694	MYO18A	ENSG00000196535.19	CDS
chr16	28,836,257	28,836,313	+	4.927	3.141	ATXN2L	ENSG00000168488.19	CDS
chr1	19,164,258	19,164,294	-	3.315	4.345	UBR4	ENSG00000127481.15	CDS
chr6	144,490,978	144,491,026	+	4.519	3.474	UTRN	ENSG00000152818.19	CDS
chr2	62,705,814	62,705,918	+	6.606	3.095	EHBP1	ENSG00000115504.15	5' UTR
chr21	8,218,749	8,218,809	+	400.000	4.494	ENSG00000278996	ENSG00000278996.1	ncRNA
chrX	20,136,220	20,136,265	-	4.259	3.713	EIF1AX	ENSG00000173674.11	Proximal intron
chr3	39,411,123	39,411,193	+	5.384	3.043	SNORA62	ENSG00000202363.1	ncRNA
chr20	32,434,662	32,434,731	+	6.500	3.747	ASXL1	ENSG00000171456.21	CDS
chr17	82,087,202	82,087,231	-	4.832	3.212	FASN	ENSG00000169710.9	CDS
chr12	57,173,820	57,173,858	+	3.861	3.702	LRP1	ENSG00000123384.14	CDS
chr21	8,391,745	8,391,794	+	3.694	4.524	ENSG00000280441	ENSG00000280441.3	ncRNA
chrX	153,690,466	153,690,510	+	4.519	3.600	SLC6A8	ENSG00000130821.17	CDS
chr14	100,734,148	100,734,180	+	4.752	3.275	DLK1	ENSG00000185559.16	CDS
chr7	26,193,626	26,193,686	-	4.077	3.521	HNRNPA2B1	ENSG00000122566.22	CDS
chr19	51,354,143	51,354,277	-	8.589	3.209	ETFB	ENSG00000105379.10	CDS
chr3	52,802,346	52,802,379	+	3.315	4.724	ITIH3	ENSG00000162267.13	CDS
chr11	93,721,737	93,721,818	+	43.150	3.272	ENSG00000273885\|SCARNA9	ENSG00000254911.3\|\|ENSG00000273885.1	ncRNA

ENCSR349CMI (K562) Peaks

Chromosome	Peak start	Peak stop	Strand	-log₁₀(p-value)	log₂(fold change)	Gene name	Ensembl ID	Feature
chr11	62,524,117	62,524,152	-	6.812	3.323	AHNAK	ENSG00000124942.14	CDS
chr1	155,318,425	155,318,495	+	6.887	4.643	FDPS	ENSG00000160752.15	Proximal intron
chr17	19,190,101	19,190,192	-	82.836	5.124	SNORD3C	ENSG00000264940.5	ncRNA
chr19	12,943,824	12,943,909	+	43.055	3.490	CALR	ENSG00000179218.15	CDS
chr7	150,370,371	150,370,463	+	5.141	4.661	REPIN1	ENSG00000214022.12	Proximal intron
chr10	68,341,974	68,342,016	+	7.407	3.233	HNRNPH3	ENSG00000096746.18	CDS
chr12	6,510,523	6,510,551	+	13.387	4.269	SCARNA10	ENSG00000239002.3	ncRNA
chr12	6,510,501	6,510,523	+	22.847	3.626	SCARNA10\|ENSG00000276232	ENSG00000276232.1\|\|ENSG00000239002.3	ncRNA
chr7	158,631,488	158,631,558	-	5.427	3.744	NCAPG2	ENSG00000146918.20	3' UTR
chr4	776,772	776,821	-	5.041	4.505	PCGF3-AS1	ENSG00000249592.7	ncRNA
chr11	62,516,135	62,516,197	-	9.922	3.649	AHNAK	ENSG00000124942.14	3' UTR
chr16	1,965,257	1,965,311	+	8.607	3.324	SNHG9\|SNORA78	ENSG00000255198.6\|\|ENSG00000273587.1	ncRNA
chr2	96,894,243	96,894,296	-	10.851	4.086	FAM178B	ENSG00000168754.15	Proximal intron
chr9	128,693,951	128,693,998	+	8.577	3.385	SET	ENSG00000119335.18	CDS
chr9	128,693,998	128,694,043	+	18.068	3.108	SET	ENSG00000119335.18	CDS
chrX	154,366,764	154,366,839	-	9.994	3.631	FLNA	ENSG00000196924.19	CDS
chr16	2,770,255	2,770,329	+	11.932	3.653	SRRM2	ENSG00000167978.17	3' splice site
chr21	8,210,695	8,210,825	+	25.720	6.660	ENSG00000278996	ENSG00000278996.1	ncRNA
chr14	69,771,571	69,771,641	+	9.645	3.349	SRSF5	ENSG00000100650.16	3' UTR
chr11	62,516,974	62,516,982	-	5.472	5.085	AHNAK	ENSG00000124942.14	CDS
chr1	173,866,877	173,866,928	-	80.731	3.104	GAS5	ENSG00000234741.10	ncRNA
chr11	17,074,696	17,074,736	-	62.680	4.514	SNORD14A	ENSG00000272034.1	ncRNA
chr17	19,112,546	19,112,616	-	31.528	8.009	SNORD3D\|ENSG00000262202	ENSG00000277947.1\|\|ENSG00000281000.1\|\|ENSG00000262202.4	ncRNA
chr11	62,517,553	62,517,575	-	5.175	3.666	AHNAK	ENSG00000124942.14	CDS
chr7	97,852,165	97,852,228	-	7.330	3.614	ASNS	ENSG00000070669.17	3' UTR
chr1	150,220,688	150,220,762	-	9.233	3.650	ANP32E	ENSG00000143401.15	CDS
chr11	62,533,508	62,533,607	-	9.808	3.926	AHNAK	ENSG00000124942.14	CDS
chr17	19,188,052	19,188,097	+	400.000	4.450	SNORD3A	ENSG00000263934.5	ncRNA
chrX	153,691,259	153,691,275	+	7.008	3.751	SLC6A8	ENSG00000130821.17	3' splice site
chr19	49,108,288	49,108,359	+	9.993	3.415	SNRNP70	ENSG00000104852.15	CDS
chr19	3,982,506	3,982,554	-	35.854	3.352	SNORD37	ENSG00000206775.1	ncRNA
chr2	96,859,885	96,859,972	-	6.576	3.757	SEMA4C	ENSG00000168758.11	3' UTR
chr2	219,538,420	219,538,509	+	8.195	5.161	ASIC4	ENSG00000072182.14	3' UTR
chr6	31,730,620	31,730,657	-	6.576	4.022	CLIC1	ENSG00000213719.8	3' UTR
chr11	62,527,135	62,527,188	-	9.391	5.142	AHNAK	ENSG00000124942.14	CDS
chr2	202,278,115	202,278,186	+	23.206	3.142	SNORD70B	ENSG00000212309.1	ncRNA
chr11	62,525,427	62,525,449	-	8.579	4.318	AHNAK	ENSG00000124942.14	CDS
chr17	58,331,459	58,331,512	-	10.508	3.127	hsa-mir-142	MI0000458	miRNA
chr6	110,814,953	110,815,062	-	5.562	4.773	CDK19	ENSG00000155111.15	CDS
chr20	62,316,442	62,316,490	-	4.918	4.612	LAMA5	ENSG00000130702.15	Proximal intron
chr6	43,778,179	43,778,241	+	24.168	3.133	VEGFA	ENSG00000112715.26	Proximal intron
chr11	17,075,776	17,075,785	-	400.000	4.863	SNORD14B	ENSG00000201403.1	ncRNA
chr11	17,075,785	17,075,807	-	400.000	4.346	SNORD14B	ENSG00000201403.1	ncRNA
chr5	40,832,677	40,832,705	-	9.808	3.481	SNORD72	ENSG00000212296.1	ncRNA
chr2	231,456,448	231,456,477	-	61.511	3.189	SNORD20	ENSG00000207280.1	ncRNA
chr3	9,943,263	9,943,314	+	3.483	4.732	CRELD1	ENSG00000163703.20	5' splice site
chr11	62,516,818	62,516,879	-	10.764	3.795	AHNAK	ENSG00000124942.14	CDS
chr11	83,158,344	83,158,385	+	5.175	3.539	PCF11	ENSG00000165494.12	Distal intron
chr11	62,518,629	62,518,666	-	6.543	3.719	AHNAK	ENSG00000124942.14	CDS
chr11	93,721,745	93,721,787	+	400.000	4.474	SCARNA9	ENSG00000254911.3	ncRNA
chr11	93,721,787	93,721,817	+	55.507	3.968	SCARNA9\|ENSG00000273885	ENSG00000273885.1\|\|ENSG00000254911.3	ncRNA
chr17	58,330,904	58,330,944	-	5.995	3.498	hsa-mir-142	MI0000458	miRNA
chr17	28,720,577	28,720,613	+	400.000	3.563	RPL23A	ENSG00000198242.14	5' UTR
chr16	2,771,225	2,771,244	+	5.586	3.211	SRRM2	ENSG00000167978.17	3' UTR
chr11	62,523,064	62,523,108	-	8.579	4.509	AHNAK	ENSG00000124942.14	CDS
chr11	35,663,564	35,663,662	+	8.258	4.516	TRIM44	ENSG00000166326.7	CDS
chr19	2,270,243	2,270,284	+	10.378	3.780	OAZ1	ENSG00000104904.12	Proximal intron
chrM	616	648	+	400.000	4.361	MT-RNR1\|MT-TF	ENSG00000211459.2\|\|ENSG00000210049.1	ncRNA
chr14	39,180,696	39,180,727	+	4.672	3.556	PNN	ENSG00000100941.9	CDS
chrX	153,691,099	153,691,176	+	39.933	4.230	SLC6A8	ENSG00000130821.17	Proximal intron
chr11	62,531,015	62,531,068	-	9.611	4.042	AHNAK	ENSG00000124942.14	CDS
chr11	62,529,828	62,529,861	-	7.775	4.402	AHNAK	ENSG00000124942.14	CDS
chr13	52,177,922	52,177,946	-	6.213	5.161	MRPS31P5\|ENSG00000217576	ENSG00000243406.6\|\|ENSG00000217576.7	ncRNA
chr19	10,295,995	10,296,123	+	12.323	3.375	ICAM5	ENSG00000105376.5	Proximal intron
chr6	43,777,709	43,777,772	+	17.168	3.293	VEGFA	ENSG00000112715.26	5' splice site
chr11	62,532,768	62,532,855	-	14.396	4.579	AHNAK	ENSG00000124942.14	CDS
chr21	8,401,817	8,401,854	+	137.566	10.545	ENSG00000280441	ENSG00000280441.3	ncRNA
chr21	8,401,779	8,401,817	+	400.000	8.285	ENSG00000280441	ENSG00000280441.3	ncRNA
chr1	109,100,244	109,100,250	+	400.000	3.775	SCARNA2\|ENSG00000270066	ENSG00000270066.3\|\|ENSG00000278249.1	ncRNA
chr1	109,100,250	109,100,277	+	400.000	3.300	ENSG00000270066\|SCARNA2	ENSG00000270066.3\|\|ENSG00000278249.1	ncRNA
chr1	90,027,583	90,027,665	+	7.964	4.626	ZNF326	ENSG00000162664.17	CDS
chr9	131,207,869	131,207,947	+	7.008	3.585	NUP214	ENSG00000126883.19	Distal intron
chr11	62,524,970	62,525,013	-	6.951	3.217	AHNAK	ENSG00000124942.14	CDS
chr21	8,218,011	8,218,038	+	11.172	6.855	ENSG00000278996	ENSG00000278996.1	ncRNA
chr21	8,218,038	8,218,073	+	11.172	6.728	ENSG00000278996	ENSG00000278996.1	ncRNA
chr21	8,217,985	8,218,011	+	4.305	4.820	ENSG00000278996	ENSG00000278996.1	ncRNA
chr7	45,104,855	45,104,887	-	8.098	3.724	TBRG4	ENSG00000136270.14	Proximal intron
chr9	98,012,420	98,012,473	+	42.167	3.854	ANP32B	ENSG00000136938.9	CDS
chr20	26,209,334	26,209,380	-	8.812	5.340	MIR663AHG	ENSG00000227195.11	ncRNA
chr20	26,209,320	26,209,334	-	7.775	4.402	MIR663AHG	ENSG00000227195.11	ncRNA
chr1	226,161,532	226,161,666	-	9.611	3.571	ACBD3	ENSG00000182827.9	CDS
chr9	133,349,441	133,349,453	+	400.000	3.264	SNORD24	ENSG00000206611.1	ncRNA
chr9	133,349,455	133,349,472	+	400.000	3.166	SNORD24	ENSG00000206611.1	ncRNA
chr17	19,188,100	19,188,131	+	400.000	4.431	SNORD3A	ENSG00000263934.5	ncRNA
chr17	19,188,097	19,188,099	+	400.000	4.424	SNORD3A	ENSG00000263934.5	ncRNA
chr9	98,015,363	98,015,368	+	27.290	3.807	ANP32B	ENSG00000136938.9	CDS
chr9	98,015,368	98,015,428	+	46.100	3.556	ANP32B	ENSG00000136938.9	CDS
chr17	19,061,964	19,062,004	+	32.824	6.232	SNORD3B-1	ENSG00000265185.6	ncRNA
chr4	82,895,851	82,895,912	-	22.371	4.803	THAP9-AS1	ENSG00000251022.6	ncRNA
chr14	23,059,165	23,059,305	-	15.517	4.150	ACIN1	ENSG00000100813.15	CDS
chr2	231,455,197	231,455,265	-	7.008	3.332	NCL	ENSG00000115053.17	CDS
chrM	10,046	10,050	+	400.000	5.162	MT-TG	ENSG00000210164.1	ncRNA
chr9	122,880,221	122,880,306	-	16.193	3.251	SNORD90	ENSG00000212447.1	ncRNA
chr11	123,058,907	123,058,909	-	64.629	3.635	HSPA8	ENSG00000109971.14	5' UTR
chr11	123,058,922	123,058,980	-	400.000	3.486	HSPA8	ENSG00000109971.14	5' UTR
chr16	2,771,090	2,771,195	+	42.595	3.886	SRRM2	ENSG00000167978.17	3' UTR
chr16	88,973,881	88,973,941	-	5.990	4.931	CBFA2T3	ENSG00000129993.15	Distal intron
chr3	160,515,178	160,515,193	-	9.087	4.700	SCARNA7	ENSG00000238741.1	ncRNA
chr11	93,721,669	93,721,735	+	79.025	4.630	SCARNA9	ENSG00000254911.3	ncRNA
chrX	20,136,112	20,136,192	-	13.360	5.016	ENSG00000201882	ENSG00000201882.1	ncRNA
chrX	20,136,059	20,136,112	-	11.089	3.497	ENSG00000201882	ENSG00000201882.1	ncRNA
chr17	35,844,657	35,844,763	+	29.246	5.471	TAF15	ENSG00000270647.7	CDS
chr7	98,881,811	98,881,887	+	51.972	3.187	hsa-mir-3609	MI0015999	miRNA
chr1	173,866,306	173,866,341	-	13.368	4.024	GAS5	ENSG00000234741.10	ncRNA
chr17	35,844,843	35,844,911	+	24.797	4.547	TAF15	ENSG00000270647.7	CDS
chr17	35,844,971	35,845,034	+	12.982	4.520	TAF15	ENSG00000270647.7	CDS
chr19	3,053,744	3,053,791	-	5.081	3.300	TLE5	ENSG00000104964.15	3' UTR
chr11	17,075,807	17,075,822	-	400.000	4.097	SNORD14B	ENSG00000201403.1	ncRNA
chr11	17,075,822	17,075,867	-	400.000	3.877	SNORD14B	ENSG00000201403.1	ncRNA
chr20	49,280,394	49,280,403	+	53.071	3.426	SNORD12B\|ZFAS1	ENSG00000222365.1\|\|ENSG00000177410.13	ncRNA
chr20	49,280,377	49,280,384	+	85.029	3.072	SNORD12B\|ZFAS1	ENSG00000222365.1\|\|ENSG00000177410.13	ncRNA
chr17	28,723,689	28,723,748	+	14.475	3.158	RPL23A	ENSG00000198242.14	CDS
chr19	2,270,086	2,270,147	+	16.496	3.925	OAZ1	ENSG00000104904.12	Proximal intron
chr19	2,270,147	2,270,215	+	10.110	3.406	OAZ1	ENSG00000104904.12	Proximal intron
chrM	614	616	+	400.000	4.559	MT-TF	ENSG00000210049.1	ncRNA
chrX	136,879,195	136,879,226	-	86.677	3.205	SNORD61	ENSG00000206979.1	ncRNA
chr10	68,341,808	68,341,852	+	6.188	3.627	HNRNPH3	ENSG00000096746.18	CDS
chr17	28,723,443	28,723,492	+	47.378	3.806	SNORD42A	ENSG00000238649.1	ncRNA
chr7	119,793,012	119,793,089	-	5.427	4.219	LINC02476	ENSG00000225546.6	ncRNA
chr11	62,518,357	62,518,395	-	8.526	3.997	AHNAK	ENSG00000124942.14	CDS
chr16	28,836,210	28,836,269	+	12.156	4.224	ATXN2L	ENSG00000168488.19	CDS
chr5	177,595,903	177,595,958	+	6.023	3.696	TMED9	ENSG00000184840.12	3' UTR
chr20	26,209,580	26,209,608	-	4.862	5.820	MIR663AHG	ENSG00000227195.11	ncRNA
chr21	8,218,775	8,218,835	+	400.000	5.384	ENSG00000278996	ENSG00000278996.1	ncRNA
chr21	8,218,740	8,218,769	+	400.000	5.354	ENSG00000278996	ENSG00000278996.1	ncRNA
chr16	70,538,040	70,538,097	+	21.652	3.131	SNORD111	ENSG00000221066.1	ncRNA
chr17	58,003,553	58,003,639	-	7.920	3.085	SRSF1	ENSG00000136450.13	3' UTR
chr17	19,062,089	19,062,137	+	124.395	10.450	SNORD3B-1	ENSG00000265185.6	ncRNA
chr17	58,331,986	58,331,996	-	6.755	3.720	MIR142HG	ENSG00000265206.6	ncRNA
chr14	39,180,809	39,180,869	+	8.917	4.007	PNN	ENSG00000100941.9	CDS
chr4	39,698,242	39,698,348	+	8.132	3.355	UBE2K	ENSG00000078140.14	CDS
chrM	4,288	4,328	+	400.000	5.231	MT-TI	ENSG00000210100.1	ncRNA
chrM	4,456	4,461	+	400.000	4.539	MT-TM	ENSG00000210112.1	ncRNA
chrM	4,440	4,456	+	400.000	3.928	MT-TM	ENSG00000210112.1	ncRNA
chrM	4,418	4,440	+	400.000	3.923	MT-TM	ENSG00000210112.1	ncRNA
chr3	37,325,203	37,325,260	+	6.290	3.412	GOLGA4	ENSG00000144674.18	CDS
chr2	202,276,451	202,276,511	+	49.960	4.463	SNORD70	ENSG00000212534.1	ncRNA
chr11	62,533,033	62,533,081	-	8.207	3.720	AHNAK	ENSG00000124942.14	CDS
chr11	62,532,932	62,533,033	-	8.893	3.526	AHNAK	ENSG00000124942.14	CDS

The following tables contain identified motifs, where a motif is a short sequence of nucleotides that is significantly enriched in called peaks. Motifs were identified using HOMER's findMotifsGenome.pl tool. Motifs were called at multiple lengths, and results from all examined lengths are aggregated in the tables.

The following columns are included in the tables:

Motif: logo plot for the identified motif.
IUPAC: sequence of motif in IUPAC code.
Motif length: length of the called motif.
P-value: Significance of the called motif.
-log₁₀(p-value): log transformed significance, a larger number indicates a greater significance.
% Peaks: percent of examined peaks with the identified motif.
% Background: percent of non-peak background regions with the motif.

Please note, this table is interactive. You can search for specific sequences, and can sort the table by any of the columns. The search buttons at thr bottom of the tables allow for specific filtering by sequence or motif length.

ENCSR085JPB (HepG2) Motifs

No significant motif were identified

ENCSR349CMI (K562) Motifs

IUPAC sequence	Motif length	P-value	-log₁₀(p-value)	% Peaks	% Background
UGWRSGUGRAGM	12	1e-17	40.21	4.44	0.0
GCRCCGAAAACC	12	1e-15	36.06	4.44	0.01
UGAGCGUGAA	10	1e-14	32.8	3.7	0.0
GCUCAGAAAA	10	1e-14	32.8	3.7	0.0