PPIL4


This analysis report summarizes PPIL4 eCLIP data from ENCODE. The current tab provides an overview of the results, and the other tabs list identified peaks and motifs.

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Experiment Summary


Experiment ID File ID Sample Antibody source Antibody ID Antibody lot Release date Laboratory Number of peaks
ENCSR197INSENCFF559HGKK562GeneTexGTX117014405552016-04-26Gene Yeo, UCSD660

PPIL4 Peak Assignments


The following plots show the assignment of peaks into different genic features:

Introns contain other subdivisions, please see the subsequent plot for a breakdown of those features.

This plot is interactive. You can hover over the bars to see the percentage and number of identified peaks. You can select which features to show by toggling the region names in the legend, and you can download the plot by moving your mouse to the top of the plot and clicking on the camera icon.

PPIL4 Intron Assignments


The following plots show the assignment of peaks into different intronic features:

  •  5’ splice site: the peak is within the first 100 bp of an intron (5’ to 3’ direction
  •  3’ splice site: the peak is within the last 100 bp of an intron (5’ to 3’ direction)
  •  Proximal intron: the peak is within 100 bp to 500 bp of the nearest exon
  •  Distal intron: greater than 500 bp away from the nearest exon

This plot is interactive. You can hover over the bars to see the percentage and number of identified peaks. You can select which features to show by toggling the region names in the legend, and you can download the plot by moving your mouse to the top of the plot and clicking on the camera icon.

PPIL4 Motifs


The following plot shows a summary of the top five motifs by significance in each experiment. Motifs were detected with varying length parameters, you may observe a similar motif with different number of bases included multiple times. A motif present in more peaks and with a higher significance will be in the upper right quadrant of the plot, while the lower left quadrant has motifs that are less significant and in fewer peaks.

This plot is interactive. You can hover over the bars to see the percentage and number of identified peaks. You can select which features to show by toggling the region names in the legend, and you can download the plot by moving your mouse to the top of the plot and clicking on the camera icon.



The following table contains called PPIL4 peaks. To identify peaks, clusters (regions of read enrichment) in the immunoprecipitated (IP) samples were found using the peak calling tool CLIPper. To account for background signal, a cluster was identified as a peak if the log2 fold enrichment over input was ≥ 3 and the p-value ≤ 0.001.

Peaks were annotated using transcript information from GENCODE. Each annotated peak is labeled with specific annotation feature types, first split by coding and non-coding transcripts, then by transcript regions, and then by intron/exon proximity regions. For overlapping transcript regions, the following hierarchy is used to label the region: coding sequence (CDS), 5’ or 3’ untranslated region (UTR), intron, non-coding exon, then non-coding intron. For example, if a peak is in the 5’ UTR of one transcript that overlaps an intron of another transcript, the peak region will be labeled as 5’ UTR. All gene annotations are from GENCODE release v41.

The following columns are included in the table:

  •  Chromosome: chromosome where the peak is located.
  •  Peak start: start coordinate for the peak.
  •  Peak stop: stop coordinate for the peak.
  •  Strand: strand of DNA where the peak was called.
  •  -log10(p-value): significance of the cluster call by CLIPper. Values are log transformed so a larger number indicates a greater significance.
  •  log2(fold change): log transformed fold enrichment of the IP signal over a matched input.
  •  Gene name: name (symbol) of the gene that overlaps with the peak.
  •  Ensembl ID: unique identifer of the gene that overlaps with the peak.
  •  Feature: which part of the listed gene overlaps with the peak.

Please note, this table is interactive. You can search for specific genes or features, and can sort the table by any of the columns.

ENCSR197INS (K562) Peaks


Chromosome Peak start Peak stop Strand -log10(p-value) log2(fold change) Gene name Ensembl ID Feature
chr255,026,51255,026,546-3.5663.027RTN4ENSG00000115310.19CDS
chr2249,555,76749,555,848-7.5664.780MIR3667HGENSG00000188511.14ncRNA
chr773,477,61473,477,729-7.4324.120BAZ1BENSG00000009954.11CDS
chr1162,517,98062,518,055-5.8723.007AHNAKENSG00000124942.14CDS
chr6147,301,757147,301,829+5.0473.446STXBP5ENSG00000164506.15Distal intron
chr1540,621,86640,621,924+3.4873.141KNL1ENSG00000137812.21CDS
chr7121,265,068121,265,152+3.2883.744CPED1ENSG00000106034.18Distal intron
chr145,650,32045,650,410-3.0843.667GPBP1L1ENSG00000159592.11Distal intron
chr1162,529,88162,529,931-6.5273.655AHNAKENSG00000124942.14CDS
chr817,969,60917,969,669+3.0843.694PCM1ENSG00000078674.19CDS
chr2167,883,004167,883,057-3.0833.759B3GALT1-AS1ENSG00000235335.3ncRNA
chr4129,073,715129,073,779-3.7293.855SCLT1ENSG00000151466.12Distal intron
chr1620,681,53320,681,616+4.6203.451ACSM3ENSG00000005187.12Distal intron
chr1165,499,45865,499,462+400.0003.002MALAT1ENSG00000251562.10ncRNA
chr2247,796,59047,796,659+3.0833.697EPIC1ENSG00000224271.8ncRNA
chr2144,034,21144,034,283+3.7293.951TRAPPC10ENSG00000160218.13Distal intron
chr1877,978,09177,978,158-8.2383.680LINC01029ENSG00000265843.3ncRNA
chr1877,978,01077,978,089-5.9043.564LINC01029ENSG00000265843.3ncRNA
chr1165,501,10765,501,126+400.0003.038MALAT1ENSG00000251562.10ncRNA
chr7121,260,250121,260,297+3.9653.257CPED1ENSG00000106034.18Distal intron
chr2138,086,28238,086,400-5.4853.493KCNJ6ENSG00000157542.11Distal intron
chr554,333,70154,333,764+3.7493.924LINC01033ENSG00000249069.8ncRNA
chr1165,500,94165,500,982+400.0003.711MALAT1ENSG00000251562.10ncRNA
chr6147,301,106147,301,181+5.2744.290STXBP5ENSG00000164506.15Distal intron
chr3160,423,620160,423,650+3.5663.112SMC4ENSG00000113810.16CDS
chr7140,830,624140,830,706-4.2943.305BRAFENSG00000157764.14Distal intron
chr7119,791,272119,791,295-3.4733.735LINC02476ENSG00000225546.6ncRNA
chr1165,499,31665,499,330+400.0003.569MALAT1ENSG00000251562.10ncRNA
chr1165,499,31065,499,316+400.0003.476MALAT1ENSG00000251562.10ncRNA
chr1165,499,30065,499,307+400.0003.349MALAT1ENSG00000251562.10ncRNA
chr1165,499,29465,499,299+400.0003.052MALAT1ENSG00000251562.10ncRNA
chr554,334,22354,334,294+4.4204.399LINC01033ENSG00000249069.8ncRNA
chr710,513,04010,513,136-4.8213.354MGC4859ENSG00000283117.1ncRNA
chr6147,298,426147,298,538+10.9745.215STXBP5ENSG00000164506.15Distal intron
chr6147,298,357147,298,426+6.1724.462STXBP5ENSG00000164506.15Distal intron
chr7119,782,425119,782,534-6.8813.752LINC02476ENSG00000225546.6ncRNA
chr1620,707,47220,707,567+3.9013.270ACSM3ENSG00000005187.12Distal intron
chr6131,690,735131,690,811+3.7293.834ENPP3ENSG00000154269.15Distal intron
chr1244,863,256244,863,301-4.6203.388HNRNPUENSG00000153187.20Proximal intron
chr1165,501,98865,501,990+400.0003.119MALAT1ENSG00000251562.10ncRNA
chr890,261,31090,261,366+5.2643.503LINC00534ENSG00000253394.7ncRNA
chr1241,631,775241,631,821-3.5663.027CHMLENSG00000203668.33' UTR
chr2249,467,76049,467,911-4.1923.489MIR3667HGENSG00000188511.14ncRNA
chr2144,035,95744,036,080+3.3143.982TRAPPC10ENSG00000160218.13Distal intron
chr176,890,5276,890,650-3.0833.871ALOX12-AS1ENSG00000215067.12ncRNA
chr1165,500,32865,500,332+400.0003.540MALAT1ENSG00000251562.10ncRNA
chr7121,248,530121,248,558+3.4923.740CPED1ENSG00000106034.18Distal intron
chr1165,500,33265,500,338+400.0003.622MALAT1ENSG00000251562.10ncRNA
chr1620,675,71620,675,751+3.2883.744ACSM3ENSG00000005187.12Distal intron
chr7121,247,361121,247,435+8.5214.050CPED1ENSG00000106034.18Distal intron
chr1165,500,09465,500,097+400.0003.688MALAT1ENSG00000251562.10ncRNA
chr1165,500,08065,500,094+400.0003.658MALAT1ENSG00000251562.10ncRNA
chr1165,500,07665,500,080+400.0003.391MALAT1ENSG00000251562.10ncRNA
chr5146,489,114146,489,206+3.0833.920TCERG1ENSG00000113649.13Distal intron
chr1165,500,56665,500,569+400.0003.402MALAT1ENSG00000251562.10ncRNA
chr112,653,3092,653,370-3.0843.667KCNQ1OT1ENSG00000269821.1ncRNA
chr7119,794,213119,794,264-4.6203.290LINC02476ENSG00000225546.6ncRNA
chr2167,881,682167,881,753-3.5113.017B3GALT1-AS1ENSG00000235335.3ncRNA
chr1165,500,74665,500,751+400.0003.885MALAT1ENSG00000251562.10ncRNA
chr1165,500,70965,500,720+400.0003.848MALAT1ENSG00000251562.10ncRNA
chr1165,500,73965,500,746+400.0003.844MALAT1ENSG00000251562.10ncRNA
chr1165,500,72465,500,730+400.0003.820MALAT1ENSG00000251562.10ncRNA
chr1165,500,73065,500,736+400.0003.810MALAT1ENSG00000251562.10ncRNA
chr1165,500,73665,500,739+400.0003.694MALAT1ENSG00000251562.10ncRNA
chr337,324,15837,324,214+5.6713.091GOLGA4ENSG00000144674.18CDS
chr7121,258,239121,258,291+7.3324.701CPED1ENSG00000106034.18Distal intron
chr1620,677,30520,677,339+3.5363.877ACSM3ENSG00000005187.12Distal intron
chr776,591,28776,591,348+5.1084.266LINC03009ENSG00000205485.13ncRNA
chr1165,500,27865,500,287+400.0004.085MALAT1ENSG00000251562.10ncRNA
chr1212,055,195212,055,310+5.3104.223DTLENSG00000143476.18Distal intron
chr2249,642,60849,642,672-5.4513.830MIR3667HGENSG00000188511.14ncRNA
chr218,401,7808,401,819+29.6896.137ENSG00000280441ENSG00000280441.3ncRNA
chr218,401,8198,401,845+22.0575.769ENSG00000280441ENSG00000280441.3ncRNA
chr2249,625,01849,625,146-4.2543.006MIR3667HGENSG00000188511.14ncRNA
chr4173,332,038173,332,069-25.0813.022HMGB2ENSG00000164104.123' UTR
chr4173,332,022173,332,038-23.8393.017HMGB2ENSG00000164104.123' UTR
chr28,956,9348,957,010-3.9693.977MBOAT2ENSG00000143797.12Distal intron
chr1165,499,16765,499,171+400.0003.037MALAT1ENSG00000251562.10ncRNA
chr182,735,4932,735,557+3.2883.716SMCHD1ENSG00000101596.17Distal intron
chr7119,787,502119,787,560-4.8813.366LINC02476ENSG00000225546.6ncRNA
chr1162,532,79462,532,838-5.6854.023AHNAKENSG00000124942.14CDS
chr1165,501,47565,501,480+400.0003.062MALAT1ENSG00000251562.10ncRNA
chr1758,331,97758,332,014-6.9803.270MIR142HGENSG00000265206.6ncRNA
chr1165,503,14165,503,146+400.0003.227MALAT1ENSG00000251562.10ncRNA
chr1165,503,16465,503,174+400.0003.170MALAT1ENSG00000251562.10ncRNA
chr1165,503,17465,503,182+400.0003.057MALAT1ENSG00000251562.10ncRNA
chr14101,801,214101,801,319+6.2623.218PPP2R5CENSG00000078304.20Distal intron
chr1162,526,96062,527,026-8.0093.885AHNAKENSG00000124942.14CDS
chr7121,230,913121,231,031+4.2393.003CPED1ENSG00000106034.18Distal intron
chr890,336,25890,336,337+3.3143.884LINC00534ENSG00000253394.7ncRNA
chr7121,259,132121,259,155+5.2643.464CPED1ENSG00000106034.18Distal intron
chr337,325,69037,325,728+3.7023.055GOLGA4ENSG00000144674.18CDS
chr2247,797,37047,797,431+4.2894.122EPIC1ENSG00000224271.8ncRNA
chr1647,285,85547,285,915-3.0843.609ITFG1ENSG00000129636.13Distal intron
chr858,630,04558,630,129-3.8803.881NSMAFENSG00000035681.9Distal intron
chr2167,884,229167,884,325-6.6624.648B3GALT1-AS1ENSG00000235335.3ncRNA
chr7102,912,882102,912,943-3.4873.059FBXL13ENSG00000161040.18Proximal intron
chr1520,420,21420,420,271-5.2744.290HERC2P3ENSG00000180229.12ncRNA
chr1720,885,17220,885,224+3.1503.097CCDC144NL-AS1ENSG00000233098.10ncRNA
chr1214,646,567214,646,620+3.0833.967CENPFENSG00000117724.14CDS
chr194,034,3594,034,406+3.4733.735PIAS4ENSG00000105229.7Distal intron
chr4776,779776,882-10.3883.792PCGF3-AS1ENSG00000249592.7ncRNA
chr7158,775,392158,775,460-3.7494.263ESYT2ENSG00000117868.18Distal intron
chr7121,260,498121,260,562+3.9034.117CPED1ENSG00000106034.18Distal intron
chr1162,523,34862,523,379-5.5234.495AHNAKENSG00000124942.14CDS
chr2247,797,22647,797,321+4.2004.149EPIC1ENSG00000224271.8ncRNA
chr2197,829,835197,829,920+3.5363.778PLCL1ENSG00000115896.16Distal intron
chr890,253,37390,253,474+14.3294.657LINC00534ENSG00000253394.7ncRNA
chr890,270,68490,270,736+3.9653.148LINC00534ENSG00000253394.7ncRNA
chr890,270,95990,271,012+3.9013.303LINC00534ENSG00000253394.7ncRNA
chr2247,765,87747,765,964+5.7584.329EPIC1ENSG00000224271.8ncRNA
chr890,258,24990,258,314+5.4853.704LINC00534ENSG00000253394.7ncRNA
chr347,120,27347,120,367-5.9043.146SETD2ENSG00000181555.22CDS
chr112,651,5672,651,689-4.2004.283KCNQ1OT1ENSG00000269821.1ncRNA
chr1162,528,96662,529,024-7.6523.905AHNAKENSG00000124942.14CDS
chr1162,531,46562,531,512-4.4573.122AHNAKENSG00000124942.14CDS
chr9133,256,588133,256,687-7.1483.641ABOENSG00000175164.16Proximal intron
chr9133,256,687133,256,777-6.5603.021ABOENSG00000175164.16Proximal intron
chr2249,601,79349,601,877-3.7293.855MIR3667HGENSG00000188511.14ncRNA
chr1631,186,59031,186,629+5.0473.363FUSENSG00000089280.19Proximal intron
chr842,030,29642,030,425-3.5363.981KAT6AENSG00000083168.11Distal intron
chr1165,500,79365,500,804+400.0004.019MALAT1ENSG00000251562.10ncRNA
chr2249,616,94149,617,038-6.5563.682MIR3667HGENSG00000188511.14ncRNA
chrM14,32014,344-18.0753.607MT-ND6ENSG00000198695.2CDS
chr4770,269770,313-3.4733.890PCGF3-AS1ENSG00000249592.7ncRNA
chr1934,391,89534,391,937+5.7113.019GPIENSG00000105220.17Distal intron
chr2167,892,734167,892,791-3.3473.038B3GALT1-AS1ENSG00000235335.3ncRNA
chr893,735,64493,735,690-3.3143.705RBM12BENSG00000183808.12CDS
chr1758,330,90658,330,944-10.3883.833hsa-mir-142MI0000458miRNA
chr2035,028,31335,028,473-5.7614.387TRPC4APENSG00000100991.12Distal intron
chr4776,100776,162-3.7023.160PCGF3-AS1ENSG00000249592.7ncRNA
chr2249,646,41849,646,527-5.2843.128MIR3667HGENSG00000188511.14ncRNA
chr1760,249,40760,249,522-3.3143.770USP32ENSG00000170832.133' UTR
chr1162,516,44362,516,479-5.0663.254AHNAKENSG00000124942.143' UTR
chr1241,630,171241,630,243-5.1444.542CHMLENSG00000203668.33' UTR
chr181,365,2951,365,347-3.3143.682LINC00470ENSG00000132204.14ncRNA
chr1072,514,81072,514,885-3.7493.976MICU1ENSG00000107745.20Distal intron
chr1520,422,55420,422,644-3.5663.420HERC2P3ENSG00000180229.12ncRNA
chr194,035,4944,035,655+7.1693.609PIAS4ENSG00000105229.7Distal intron
chr1224,937,920224,938,048+4.4204.257DNAH14ENSG00000185842.16Distal intron
chr6166,992,124166,992,183-3.3143.705ENSG00000227598ENSG00000227598.1ncRNA
chr1162,524,69362,524,756-8.2405.127AHNAKENSG00000124942.14CDS
chr1214,639,957214,640,018+3.9693.977CENPFENSG00000117724.14CDS
chr189,258,0919,258,149+3.5363.839ANKRD12ENSG00000101745.17CDS
chr890,255,07290,255,123+6.5964.538LINC00534ENSG00000253394.7ncRNA
chr337,324,82337,324,872+4.8813.348GOLGA4ENSG00000144674.18CDS
chr7121,248,220121,248,277+8.0833.904CPED1ENSG00000106034.18Distal intron
chr264,000,94764,001,027-4.5194.078VPS54ENSG00000143952.20Distal intron
chr1165,501,27965,501,283+400.0004.296MALAT1ENSG00000251562.10ncRNA
chr1165,501,27265,501,279+400.0004.192MALAT1ENSG00000251562.10ncRNA
chr1165,501,28365,501,308+400.0004.059MALAT1ENSG00000251562.10ncRNA
chr1165,501,26665,501,272+400.0003.547MALAT1ENSG00000251562.10ncRNA
chr7121,247,459121,247,513+6.9913.896CPED1ENSG00000106034.18Distal intron
chr36,577,0646,577,145+7.8434.038ENSG00000189229ENSG00000189229.12ncRNA
chr36,577,1456,577,193+3.7773.226ENSG00000189229ENSG00000189229.12ncRNA
chr337,326,01937,326,136+8.8533.385GOLGA4ENSG00000144674.18CDS
chr2138,098,66238,098,739-5.5184.554KCNJ6ENSG00000157542.11Distal intron
chr139,333,79939,333,854+3.9013.074MACF1ENSG00000127603.32CDS
chr6147,295,638147,295,734+4.8713.167STXBP5ENSG00000164506.15Distal intron
chr1620,706,87120,706,949+6.1243.624ACSM3ENSG00000005187.12Distal intron
chr7119,797,086119,797,106-14.1525.692LINC02476ENSG00000225546.6ncRNA
chr7119,797,028119,797,086-15.0044.947LINC02476ENSG00000225546.6ncRNA
chr7119,797,106119,797,154-15.6824.405LINC02476ENSG00000225546.6ncRNA
chr1165,502,03665,502,041+400.0003.085MALAT1ENSG00000251562.10ncRNA
chr890,241,83890,241,941+3.0673.603LINC00534ENSG00000253394.7ncRNA
chr890,264,21790,264,280+6.1784.508LINC00534ENSG00000253394.7ncRNA
chr2167,883,137167,883,242-5.4513.586B3GALT1-AS1ENSG00000235335.3ncRNA
chr857,210,15657,210,323+10.2674.510LINC01606ENSG00000253301.6ncRNA
chr890,262,77190,262,822+7.6893.920LINC00534ENSG00000253394.7ncRNA
chr890,262,69190,262,771+10.5433.495LINC00534ENSG00000253394.7ncRNA
chr1921,446,20521,446,317-4.8713.046ENSG00000268119ENSG00000268119.8ncRNA
chr2249,628,29849,628,360-3.9033.885MIR3667HGENSG00000188511.14ncRNA
chr610,936,12610,936,234+3.0843.609SYCP2LENSG00000153157.13Distal intron
chr1048,336,79648,336,849+3.1023.021MAPK8ENSG00000107643.17Distal intron
chr141,170,49141,170,600-5.2643.628SCMH1ENSG00000010803.17Distal intron
chr1750,739,39750,739,449+3.9033.885LUC7L3ENSG00000108848.16Distal intron
chr1162,527,10962,527,190-6.3663.360AHNAKENSG00000124942.14CDS
chr7121,257,984121,258,063+7.1893.039CPED1ENSG00000106034.18Distal intron
chr36,575,2466,575,303+8.5304.006ENSG00000189229ENSG00000189229.12ncRNA
chr8129,425,464129,425,529-3.0834.078CCDC26ENSG00000229140.12ncRNA
chr857,209,90257,209,990+5.1444.250LINC01606ENSG00000253301.6ncRNA
chr4129,063,713129,063,784-3.7494.009SCLT1ENSG00000151466.12Distal intron
chr7119,793,730119,793,790-5.6793.366LINC02476ENSG00000225546.6ncRNA
chr610,940,18910,940,250+3.7293.855SYCP2LENSG00000153157.13Distal intron
chr28,951,4978,951,578-3.6973.812MBOAT2ENSG00000143797.12Distal intron
chr7119,791,335119,791,396-5.3104.477LINC02476ENSG00000225546.6ncRNA
chr1540,623,28040,623,343+4.6314.051KNL1ENSG00000137812.21CDS
chr7102,910,796102,910,851-3.0843.793FBXL13ENSG00000161040.18Distal intron
chr78,044,3828,044,446+3.3143.848GLCCI1ENSG00000106415.13Distal intron
chr841,742,46841,742,531-3.0833.779ANK1ENSG00000029534.21Distal intron
chr1162,517,36162,517,429-10.9694.502AHNAKENSG00000124942.14CDS
chr687,257,09987,257,173+3.6974.020ZNF292ENSG00000188994.14CDS
chr337,325,50137,325,556+5.0543.431GOLGA4ENSG00000144674.18CDS
chr1165,502,45765,502,466+400.0003.221MALAT1ENSG00000251562.10ncRNA
chr1165,502,45165,502,457+400.0003.162MALAT1ENSG00000251562.10ncRNA
chr6147,295,913147,295,980+6.3303.628STXBP5ENSG00000164506.15Distal intron
chr7119,786,346119,786,430-9.5655.195LINC02476ENSG00000225546.6ncRNA
chr7158,777,438158,777,523-3.3143.140ESYT2ENSG00000117868.18Distal intron
chr6163,470,120163,470,246+4.9314.513QKIENSG00000112531.17Distal intron
chr1934,384,64634,384,696+4.1373.024GPIENSG00000105220.17Distal intron
chr890,271,17090,271,210+5.0924.186LINC00534ENSG00000253394.7ncRNA
chr1165,500,24865,500,255+400.0004.112MALAT1ENSG00000251562.10ncRNA
chr1165,500,24265,500,248+400.0004.089MALAT1ENSG00000251562.10ncRNA
chr1165,500,25865,500,267+400.0004.066MALAT1ENSG00000251562.10ncRNA
chr1165,500,22865,500,242+400.0003.956MALAT1ENSG00000251562.10ncRNA
chr1165,500,22065,500,228+400.0003.767MALAT1ENSG00000251562.10ncRNA
chr1165,500,20865,500,220+400.0003.701MALAT1ENSG00000251562.10ncRNA
chr890,256,13990,256,189+5.4713.614LINC00534ENSG00000253394.7ncRNA
chr473,258,12873,258,205-3.1213.030ANKRD17ENSG00000132466.205' splice site
chr5126,901,878126,901,973-5.5604.298MARCHF3ENSG00000173926.6Distal intron
chr1565,689,54165,689,602-3.4733.735DENND4AENSG00000174485.16Distal intron
chr3196,912,481196,912,553+3.3143.705SENP5ENSG00000119231.11Distal intron
chr1162,524,96162,525,018-4.2393.436AHNAKENSG00000124942.14CDS
chr1165,501,78565,501,792+400.0003.213MALAT1ENSG00000251562.10ncRNA
chr1165,501,77565,501,781+400.0003.092MALAT1ENSG00000251562.10ncRNA
chr1165,501,78165,501,785+400.0003.060MALAT1ENSG00000251562.10ncRNA
chr6147,304,797147,304,856+3.4733.790STXBP5ENSG00000164506.15Distal intron
chr14101,802,643101,802,697+4.5194.032PPP2R5CENSG00000078304.20Distal intron
chr857,205,78157,205,868+5.0924.608LINC01606ENSG00000253301.6ncRNA
chr857,205,70957,205,781+4.4204.216LINC01606ENSG00000253301.6ncRNA
chr2167,891,589167,891,660-5.2643.744B3GALT1-AS1ENSG00000235335.3ncRNA
chr1530,676,00130,676,072+3.0833.697ENSG00000284906ENSG00000284906.3Distal intron
chr7119,797,785119,797,868-11.7124.010LINC02476ENSG00000225546.6ncRNA
chr139,332,10239,332,177+3.1213.094MACF1ENSG00000127603.32CDS
chr6147,255,371147,255,465+3.7023.055STXBP5ENSG00000164506.15Distal intron
chr2167,910,056167,910,164-5.5234.381B3GALT1-AS1ENSG00000235335.3ncRNA
chr194,037,3114,037,385+8.0163.426PIAS4ENSG00000105229.7CDS
chr2138,099,30038,099,347-5.6773.668DSCR4ENSG00000184029.9ncRNA
chr112,651,3462,651,445-3.9034.000KCNQ1OT1ENSG00000269821.1ncRNA
chr7121,245,712121,245,756+4.1923.334CPED1ENSG00000106034.18Distal intron
chr1742,275,45342,275,592-6.3303.749ENSG00000278829ENSG00000278829.1ncRNA
chr1620,676,57820,676,631+4.4204.062ACSM3ENSG00000005187.12Distal intron
chr7119,884,386119,884,442-4.6234.329LINC02476ENSG00000225546.6ncRNA
chr189,257,6649,257,730+3.8763.196ANKRD12ENSG00000101745.17CDS
chr610,940,85410,940,998+8.7384.120SYCP2LENSG00000153157.13Distal intron
chr1620,687,36520,687,447+4.2894.080ACSM3ENSG00000005187.12Distal intron
chr890,257,12090,257,155+3.8803.931LINC00534ENSG00000253394.7ncRNA
chr890,372,35990,372,418+4.6234.109LINC00534ENSG00000253394.7ncRNA
chr7102,901,672102,901,775-4.2004.149FBXL13ENSG00000161040.18Distal intron
chr2249,568,21249,568,283-4.8634.148MIR3667HGENSG00000188511.14ncRNA
chr432,010,13732,010,222+5.2643.424LINC02506ENSG00000251129.3ncRNA
chr7121,258,814121,258,853+5.5234.339CPED1ENSG00000106034.18Distal intron
chr1165,503,05965,503,066+400.0003.037MALAT1ENSG00000251562.10ncRNA
chr7121,261,477121,261,553+3.5663.027CPED1ENSG00000106034.183' splice site
chr337,327,86237,327,944+4.6984.533GOLGA4ENSG00000144674.185' splice site
chr7102,910,537102,910,595-4.2004.406FBXL13ENSG00000161040.18Distal intron
chr539,006,06439,006,169-3.3143.727RICTORENSG00000164327.13Distal intron
chr1214,641,826214,641,870+3.3143.866CENPFENSG00000117724.14CDS
chr7149,005,226149,005,279-3.4733.763PDIA4ENSG00000155660.11CDS
chr1162,529,50262,529,525-6.1784.442AHNAKENSG00000124942.14CDS
chr9133,254,346133,254,389-4.2893.990ABOENSG00000175164.16Distal intron
chr139,335,42739,335,479+3.2883.659MACF1ENSG00000127603.32CDS
chr2167,891,965167,892,025-3.1213.078B3GALT1-AS1ENSG00000235335.3ncRNA
chr7121,258,539121,258,596+8.9005.021CPED1ENSG00000106034.18Distal intron
chr7121,258,596121,258,632+3.9653.364CPED1ENSG00000106034.18Distal intron
chr218,218,7508,218,769+21.1283.546ENSG00000278996ENSG00000278996.1ncRNA
chr218,218,7698,218,791+23.0123.357ENSG00000278996ENSG00000278996.1ncRNA
chr1165,503,12865,503,139+400.0003.822MALAT1ENSG00000251562.10ncRNA
chr1165,503,09265,503,106+400.0003.638MALAT1ENSG00000251562.10ncRNA
chr1165,503,08965,503,092+400.0003.542MALAT1ENSG00000251562.10ncRNA
chr1165,503,08365,503,089+400.0003.540MALAT1ENSG00000251562.10ncRNA
chr1165,503,07865,503,082+400.0003.500MALAT1ENSG00000251562.10ncRNA
chr1165,503,10665,503,127+400.0003.385MALAT1ENSG00000251562.10ncRNA
chr1165,503,06665,503,078+400.0003.249MALAT1ENSG00000251562.10ncRNA
chr890,264,01590,264,079+9.3094.137LINC00534ENSG00000253394.7ncRNA
chr890,263,92990,263,996+6.8373.273LINC00534ENSG00000253394.7ncRNA
chr2137,108,70637,108,814+3.2883.688TTC3ENSG00000182670.14Proximal intron
chr7119,797,469119,797,545-6.1783.122LINC02476ENSG00000225546.6ncRNA
chr890,271,76690,271,818+3.5663.202LINC00534ENSG00000253394.7ncRNA
chr2144,034,09044,034,184+4.4204.270TRAPPC10ENSG00000160218.13Distal intron
chr1934,382,81034,382,868+5.4853.740GPIENSG00000105220.17Distal intron
chr7119,795,579119,795,668-12.2493.861LINC02476ENSG00000225546.6ncRNA
chr337,324,23637,324,309+6.2623.257GOLGA4ENSG00000144674.18CDS
chr776,597,06476,597,149+3.0843.720LINC03009ENSG00000205485.13ncRNA
chr1162,533,51462,533,585-6.7903.179AHNAKENSG00000124942.14CDS
chr1877,977,40977,977,543-13.4314.960LINC01029ENSG00000265843.3ncRNA
chr2144,034,38844,034,476+4.1923.234TRAPPC10ENSG00000160218.13Distal intron
chr9131,210,831131,210,913+3.1213.282NUP214ENSG00000126883.19Distal intron
chr7119,706,530119,706,580-6.5864.503LINC02476ENSG00000225546.6ncRNA
chr7119,706,580119,706,635-7.6013.491LINC02476ENSG00000225546.6ncRNA
chr181,366,0341,366,091-4.2004.192LINC00470ENSG00000132204.14ncRNA
chr7119,705,136119,705,201-3.9033.934LINC02476ENSG00000225546.6ncRNA
chr890,272,66890,272,728+6.1784.545LINC00534ENSG00000253394.7ncRNA
chr2133,232,71233,232,797+4.4204.027ENSG00000249624|IFNAR2ENSG00000249624.10||ENSG00000159110.22Distal intron
chr2249,648,77049,648,836-5.1444.190MIR3667HGENSG00000188511.14ncRNA
chr1162,519,20362,519,256-8.3114.149AHNAKENSG00000124942.14CDS
chr1782,462,74382,462,771+3.0833.697ENSG00000279744ENSG00000279744.1ncRNA
chr2138,085,84438,085,938-4.8213.559KCNJ6ENSG00000157542.11Distal intron
chr1162,517,43962,517,542-7.0203.296AHNAKENSG00000124942.14CDS
chr7119,800,509119,800,569-6.5273.253LINC02476ENSG00000225546.6ncRNA
chr7121,247,308121,247,361+5.7584.401CPED1ENSG00000106034.18Distal intron
chr2249,643,95349,644,014-3.1503.097MIR3667HGENSG00000188511.14ncRNA
chr7119,705,008119,705,117-9.2343.606LINC02476ENSG00000225546.6ncRNA
chr7119,704,775119,704,867-5.4713.603LINC02476ENSG00000225546.6ncRNA
chr890,271,55890,271,649+8.8323.320LINC00534ENSG00000253394.7ncRNA
chr890,257,94390,257,986+4.8634.227LINC00534ENSG00000253394.7ncRNA
chr2247,773,55447,773,609+3.0833.936EPIC1ENSG00000224271.8ncRNA
chr1165,425,07065,425,108+8.5223.240NEAT1ENSG00000245532.11ncRNA
chr7119,706,813119,706,850-3.3143.770LINC02476ENSG00000225546.6ncRNA
chr9133,254,511133,254,617-8.3293.046ABOENSG00000175164.16Distal intron
chr1214,642,594214,642,657+7.2013.817CENPFENSG00000117724.14CDS
chr1520,427,96420,428,079-3.3144.182HERC2P3ENSG00000180229.12ncRNA
chr2249,587,46349,587,527-3.4733.956MIR3667HGENSG00000188511.14ncRNA
chr2249,587,39749,587,463-3.8763.176MIR3667HGENSG00000188511.14ncRNA
chr7121,247,595121,247,694+10.9745.175CPED1ENSG00000106034.18Distal intron
chr1165,500,75565,500,760+400.0003.944MALAT1ENSG00000251562.10ncRNA
chr1165,500,70165,500,705+400.0003.807MALAT1ENSG00000251562.10ncRNA
chr1165,500,70565,500,709+400.0003.721MALAT1ENSG00000251562.10ncRNA
chr9131,206,959131,207,018+7.8183.135NUP214ENSG00000126883.19Distal intron
chr7102,908,980102,909,047-4.6203.348FBXL13ENSG00000161040.18Distal intron
chr2247,769,81047,769,875+3.0673.692EPIC1ENSG00000224271.8ncRNA
chr776,595,84676,595,939+3.3143.682LINC03009ENSG00000205485.13ncRNA
chr1770,029,37770,029,456-5.2744.290ENSG00000230258ENSG00000230258.6ncRNA
chr347,910,48047,910,539-3.0833.674MAP4ENSG00000047849.22CDS
chr7140,822,911140,822,992-3.7773.136BRAFENSG00000157764.14Distal intron
chr2247,767,07147,767,146+5.0473.433EPIC1ENSG00000224271.8ncRNA
chr9133,254,031133,254,121-5.6793.281ABOENSG00000175164.16Distal intron
chr9131,204,339131,204,420+11.1723.561NUP214ENSG00000126883.19Distal intron
chr1244,863,370244,863,414-5.9874.532HNRNPUENSG00000153187.20Proximal intron
chr7102,909,370102,909,427-4.6234.091FBXL13ENSG00000161040.18Distal intron
chr7102,909,427102,909,499-3.3473.149FBXL13ENSG00000161040.18Distal intron
chr5126,909,637126,909,723-3.3473.020MARCHF3ENSG00000173926.6Distal intron
chr7119,789,611119,789,670-15.2585.608LINC02476ENSG00000225546.6ncRNA
chr7121,253,653121,253,718+3.7294.067CPED1ENSG00000106034.18Distal intron
chr2177,367,578177,367,677-3.7493.807NFE2L2ENSG00000116044.17Distal intron
chr6166,992,495166,992,549-3.3143.705ENSG00000227598ENSG00000227598.1ncRNA
chr2167,895,060167,895,170-5.2744.552B3GALT1-AS1ENSG00000235335.3ncRNA
chr1688,964,19888,964,327-6.2034.574CBFA2T3ENSG00000129993.15Distal intron
chr7119,791,498119,791,556-5.5234.632LINC02476ENSG00000225546.6ncRNA
chr1162,518,60862,518,675-6.2943.150AHNAKENSG00000124942.14CDS
chr2217,048,73217,048,814+3.3473.071CECR7ENSG00000237438.7ncRNA
chr6147,303,152147,303,199+3.0673.745STXBP5ENSG00000164506.15Distal intron
chr1167,777,290167,777,410+6.1784.533MPZL1ENSG00000197965.12Distal intron
chr1167,782,724167,782,816+3.0673.692MPZL1ENSG00000197965.12Distal intron
chr1921,447,56221,447,683-4.8634.339ENSG00000268119ENSG00000268119.8ncRNA
chr7121,232,181121,232,238+3.7493.807CPED1ENSG00000106034.18Distal intron
chr6147,296,227147,296,338+6.8874.757STXBP5ENSG00000164506.15Distal intron
chr7119,785,976119,786,028-3.1253.080LINC02476ENSG00000225546.6ncRNA
chr7121,248,072121,248,127+8.0093.526CPED1ENSG00000106034.18Distal intron
chr7121,157,335121,157,442+3.1213.109CPED1ENSG00000106034.18Distal intron
chr6147,295,319147,295,373+3.6973.979STXBP5ENSG00000164506.15Distal intron
chr6147,295,390147,295,445+4.2673.207STXBP5ENSG00000164506.15Distal intron
chr2249,636,77149,636,816-3.8803.977MIR3667HGENSG00000188511.14ncRNA
chr1165,500,56965,500,572+400.0003.384MALAT1ENSG00000251562.10ncRNA
chr1165,500,57265,500,582+400.0003.376MALAT1ENSG00000251562.10ncRNA
chr1165,500,58265,500,589+400.0003.316MALAT1ENSG00000251562.10ncRNA
chr218,218,7408,218,750+18.5673.333ENSG00000278996ENSG00000278996.1ncRNA
chr890,253,83990,253,904+9.1954.097LINC00534ENSG00000253394.7ncRNA
chr2167,891,519167,891,589-4.2004.319B3GALT1-AS1ENSG00000235335.3ncRNA
chr4778,039778,121-7.7894.709PCGF3-AS1ENSG00000249592.7ncRNA
chr2247,773,22747,773,282+3.3143.749EPIC1ENSG00000224271.8ncRNA
chr1165,499,35165,499,361+400.0003.797MALAT1ENSG00000251562.10ncRNA
chr1165,499,34765,499,351+400.0003.686MALAT1ENSG00000251562.10ncRNA
chr1165,499,36165,499,386+400.0003.673MALAT1ENSG00000251562.10ncRNA
chr1877,987,67377,987,754-3.1213.570LINC01029ENSG00000265843.3ncRNA
chr1165,500,13165,500,166+400.0004.776MALAT1ENSG00000251562.10ncRNA
chr1165,500,16665,500,171+400.0004.724MALAT1ENSG00000251562.10ncRNA
chr1620,684,90520,684,978+4.9314.214ACSM3ENSG00000005187.12Distal intron
chr7119,783,941119,784,000-4.6893.388LINC02476ENSG00000225546.6ncRNA
chr7119,784,003119,784,052-4.6893.353LINC02476ENSG00000225546.6ncRNA
chr2167,883,301167,883,392-4.8213.490B3GALT1-AS1ENSG00000235335.3ncRNA
chr890,260,88490,260,927+3.5364.012LINC00534ENSG00000253394.7ncRNA
chr1620,706,55320,706,615+4.1074.041ACSM3ENSG00000005187.12Distal intron
chr2249,599,97249,600,082-5.5604.317MIR3667HGENSG00000188511.14ncRNA
chr1165,500,37765,500,381+400.0003.202MALAT1ENSG00000251562.10ncRNA
chr1162,525,42162,525,486-8.9075.094AHNAKENSG00000124942.14CDS
chr1647,299,12147,299,210-4.5194.099ITFG1ENSG00000129636.13Distal intron
chr41,971,6511,971,728+3.2883.770NSD2ENSG00000109685.19Distal intron
chr4129,056,770129,056,901-4.2004.071SCLT1ENSG00000151466.12Distal intron
chr6147,295,869147,295,909+4.1073.927STXBP5ENSG00000164506.15Distal intron
chr2249,570,52049,570,581-4.4204.062MIR3667HGENSG00000188511.14ncRNA
chr1527,101,45627,101,529+3.3143.884GABRG3ENSG00000182256.13Distal intron
chr1167,777,527167,777,587+3.7493.848MPZL1ENSG00000197965.12Distal intron
chr1543,771,44643,771,503+3.6973.839PDIA3ENSG00000167004.143' UTR
chr1565,686,79665,686,863-7.0973.842DENND4AENSG00000174485.16Distal intron
chr1877,984,16677,984,191-3.1503.112ENSG00000264334ENSG00000264334.1ncRNA
chr1165,502,04165,502,046+400.0003.118MALAT1ENSG00000251562.10ncRNA
chr1162,523,95062,524,031-8.2163.625AHNAKENSG00000124942.14CDS
chr710,515,19610,515,257-3.3143.790MGC4859ENSG00000283117.1ncRNA
chr1072,511,87072,511,972-3.9013.074MICU1ENSG00000107745.20Distal intron
chr1165,501,14765,501,168+400.0003.061MALAT1ENSG00000251562.10ncRNA
chr1162,532,96362,533,066-13.3523.858AHNAKENSG00000124942.14CDS
chr7121,260,420121,260,466+4.1074.020CPED1ENSG00000106034.18Distal intron
chr7119,791,629119,791,669-3.5663.159LINC02476ENSG00000225546.6ncRNA
chr2249,641,38949,641,427-3.0843.638MIR3667HGENSG00000188511.14ncRNA
chr857,209,72957,209,834+5.4513.609LINC01606ENSG00000253301.6ncRNA
chr7121,247,906121,247,984+8.6673.716CPED1ENSG00000106034.18Distal intron
chr7121,247,797121,247,906+8.6213.325CPED1ENSG00000106034.18Distal intron
chr1162,528,10462,528,134-5.0924.434AHNAKENSG00000124942.14CDS
chr2167,891,410167,891,478-3.1213.245B3GALT1-AS1ENSG00000235335.3ncRNA
chr1162,517,74862,517,809-7.8624.174AHNAKENSG00000124942.14CDS
chr1921,448,56721,448,694-5.6683.074ENSG00000268119ENSG00000268119.8ncRNA
chr1165,500,65865,500,662+400.0004.271MALAT1ENSG00000251562.10ncRNA
chr1165,500,65565,500,658+400.0004.247MALAT1ENSG00000251562.10ncRNA
chr1165,500,65265,500,654+400.0004.159MALAT1ENSG00000251562.10ncRNA
chr1165,500,63665,500,652+400.0004.043MALAT1ENSG00000251562.10ncRNA
chr1165,500,63165,500,635+400.0003.720MALAT1ENSG00000251562.10ncRNA
chr1165,500,62465,500,630+400.0003.695MALAT1ENSG00000251562.10ncRNA
chr36,583,0926,583,150+6.2034.607ENSG00000189229ENSG00000189229.12ncRNA
chr1165,500,66765,500,679+400.0004.322MALAT1ENSG00000251562.10ncRNA
chr1165,500,66265,500,666+400.0004.316MALAT1ENSG00000251562.10ncRNA
chr1165,500,67965,500,683+400.0004.238MALAT1ENSG00000251562.10ncRNA
chr1212,056,075212,056,140+3.4733.735DTLENSG00000143476.18Distal intron
chr7106,258,883106,259,005-3.7023.055NAMPTENSG00000105835.13Distal intron
chr1165,500,35665,500,373+400.0003.367MALAT1ENSG00000251562.10ncRNA
chr1165,500,37465,500,377+400.0003.271MALAT1ENSG00000251562.10ncRNA
chr1934,392,12234,392,159+5.6773.567GPIENSG00000105220.17Distal intron
chr610,938,00710,938,090+3.5363.931SYCP2LENSG00000153157.13Distal intron
chr1165,500,33865,500,356+400.0003.730MALAT1ENSG00000251562.10ncRNA
chr1520,420,75220,420,815-4.8634.212HERC2P3ENSG00000180229.12ncRNA
chr12103,939,512103,939,597+13.5433.499HSP90B1ENSG00000166598.16CDS
chr2249,541,54849,541,631-3.7294.052MIR3667HGENSG00000188511.14ncRNA
chr6147,300,202147,300,263+3.1213.124STXBP5ENSG00000164506.15Distal intron
chr432,014,89332,014,969+3.4923.867LINC02506ENSG00000251129.3ncRNA
chr890,272,99290,273,062+5.2823.148LINC00534ENSG00000253394.7ncRNA
chr890,258,18490,258,226+5.2793.428LINC00534ENSG00000253394.7ncRNA
chr1048,353,90548,354,000+4.4204.112MAPK8ENSG00000107643.17Distal intron
chr141,168,98041,169,035-3.6973.864SCMH1ENSG00000010803.17Distal intron
chr161,316,3371,316,456+5.9043.381UBE2IENSG00000103275.21Distal intron
chr1165,500,12565,500,127+400.0004.411MALAT1ENSG00000251562.10ncRNA
chr1165,500,10765,500,125+400.0004.213MALAT1ENSG00000251562.10ncRNA
chr1165,500,09765,500,107+400.0003.653MALAT1ENSG00000251562.10ncRNA
chr2249,644,01449,644,085-5.2643.477MIR3667HGENSG00000188511.14ncRNA
chr2249,590,20949,590,284-3.2883.866MIR3667HGENSG00000188511.14ncRNA
chr3152,421,271152,421,326+3.0833.904MBNL1ENSG00000152601.18Distal intron
chr7119,794,100119,794,116-10.2954.324LINC02476ENSG00000225546.6ncRNA
chr7119,794,060119,794,100-8.8553.412LINC02476ENSG00000225546.6ncRNA
chr7119,795,250119,795,362-15.0873.947LINC02476ENSG00000225546.6ncRNA
chr36,582,4606,582,514+4.3153.971ENSG00000189229ENSG00000189229.12ncRNA
chr2247,793,52947,793,632+4.2004.178EPIC1ENSG00000224271.8ncRNA
chr7140,824,556140,824,661-5.4843.245BRAFENSG00000157764.14Distal intron
chr2247,753,39747,753,522+3.1253.041EPIC1ENSG00000224271.8ncRNA
chr7119,706,921119,706,971-4.6314.152LINC02476ENSG00000225546.6ncRNA
chr1162,525,80162,525,857-4.8634.757AHNAKENSG00000124942.14CDS
chr2144,035,43744,035,506+3.7294.020TRAPPC10ENSG00000160218.13Distal intron
chr890,252,27590,252,304+3.5663.112LINC00534ENSG00000253394.7ncRNA
chr890,261,52090,261,632+7.0864.779LINC00534ENSG00000253394.7ncRNA
chr2249,549,45749,549,567-5.2643.539MIR3667HGENSG00000188511.14ncRNA
chr192,270,2132,270,274+6.9803.045OAZ1ENSG00000104904.12Proximal intron
chr1165,504,33265,504,342+400.0003.026MALAT1ENSG00000251562.10ncRNA
chr1165,502,05565,502,061+400.0003.131MALAT1ENSG00000251562.10ncRNA
chr1620,676,41920,676,472+6.2883.619ACSM3ENSG00000005187.12Distal intron
chr1165,501,25365,501,266+400.0003.894MALAT1ENSG00000251562.10ncRNA
chr1165,501,22865,501,253+400.0003.757MALAT1ENSG00000251562.10ncRNA
chr9131,211,231131,211,291+3.5363.948NUP214ENSG00000126883.19Distal intron
chr841,741,54141,741,584-3.7494.040ANK1ENSG00000029534.21Distal intron
chr139,331,83239,331,914+5.9103.737MACF1ENSG00000127603.32CDS
chr6117,700,931117,701,002+4.4204.128NUS1ENSG00000153989.8Distal intron
chr9131,204,435131,204,478+3.7294.052NUP214ENSG00000126883.19Distal intron
chr890,272,39590,272,501+13.0275.426LINC00534ENSG00000253394.7ncRNA
chr890,271,66790,271,728+7.2294.664LINC00534ENSG00000253394.7ncRNA
chr2249,463,20749,463,287-3.0833.835MIR3667HGENSG00000188511.14ncRNA
chr145,608,66145,608,732+4.8634.131NASPENSG00000132780.17Proximal intron
chr890,271,45490,271,536+6.4513.361LINC00534ENSG00000253394.7ncRNA
chr997,938,06997,938,125-3.1503.219HEMGNENSG00000136929.13CDS
chr1631,186,00431,186,060+6.7783.834FUSENSG00000089280.19Distal intron
chr1262,514,41662,514,505+3.0834.025MON2ENSG00000061987.16Distal intron
chr7119,790,307119,790,358-5.2744.509LINC02476ENSG00000225546.6ncRNA
chr1620,677,49420,677,546+3.9013.074ACSM3ENSG00000005187.12Distal intron
chr1203,798,678203,798,713+3.0843.694ZBED6ENSG00000257315.4CDS
chr890,253,47490,253,584+8.4573.811LINC00534ENSG00000253394.7ncRNA
chr1927,776,83127,776,919-3.0673.664LINC00662ENSG00000261824.8ncRNA
chr1162,526,58362,526,632-5.0663.200AHNAKENSG00000124942.14CDS
chr141,169,34441,169,416-4.1074.041SCMH1ENSG00000010803.17Distal intron
chr141,169,41641,169,481-4.0933.194SCMH1ENSG00000010803.17Distal intron
chr7121,257,105121,257,156+10.0615.094CPED1ENSG00000106034.18Distal intron
chr7121,257,067121,257,105+7.0864.628CPED1ENSG00000106034.18Distal intron
chr2249,645,73549,645,790-4.2893.990MIR3667HGENSG00000188511.14ncRNA
chr1162,520,76262,520,809-5.5503.011AHNAKENSG00000124942.14CDS
chr1293,691,63193,691,775+3.4923.712CRADDENSG00000169372.13Distal intron
chr7119,795,374119,795,415-5.8483.653LINC02476ENSG00000225546.6ncRNA
chr1165,500,60565,500,612+400.0003.525MALAT1ENSG00000251562.10ncRNA
chr1165,500,58965,500,601+400.0003.449MALAT1ENSG00000251562.10ncRNA
chr1165,500,60165,500,605+400.0003.421MALAT1ENSG00000251562.10ncRNA
chr2249,599,39549,599,526-5.7584.555MIR3667HGENSG00000188511.14ncRNA
chr1162,518,50862,518,534-5.2744.736AHNAKENSG00000124942.14CDS
chr1162,518,53462,518,574-6.3283.605AHNAKENSG00000124942.14CDS
chr337,275,27337,275,384+5.0924.264GOLGA4ENSG00000144674.18Distal intron
chr2249,594,07449,594,171-4.6984.413MIR3667HGENSG00000188511.14ncRNA
chr890,253,71390,253,759+5.5184.436LINC00534ENSG00000253394.7ncRNA
chr890,253,75990,253,810+7.6523.844LINC00534ENSG00000253394.7ncRNA
chr554,339,88754,339,940+5.3104.521LINC01033ENSG00000249069.8ncRNA
chr1203,797,784203,797,836+6.1243.670ZBED6ENSG00000257315.4CDS
chr7119,900,808119,900,857-5.1444.269LINC02476ENSG00000225546.6ncRNA
chr1165,500,69865,500,701+400.0003.846MALAT1ENSG00000251562.10ncRNA
chr9136,670,467136,670,564+5.4513.584hsa-mir-126MI0000471miRNA
chr6147,302,906147,302,967+4.8634.271STXBP5ENSG00000164506.15Distal intron
chr7119,798,584119,798,634-9.3183.746LINC02476ENSG00000225546.6ncRNA
chr7121,244,482121,244,545+3.3473.149CPED1ENSG00000106034.18Proximal intron
chr189,256,8079,256,894+5.4713.469ANKRD12ENSG00000101745.17CDS
chr890,256,50790,256,553+21.0374.613LINC00534ENSG00000253394.7ncRNA
chr890,256,48290,256,507+12.8903.781LINC00534ENSG00000253394.7ncRNA
chr337,324,33437,324,431+13.2034.659GOLGA4ENSG00000144674.18CDS
chr1214,642,361214,642,438+6.9593.919CENPFENSG00000117724.14CDS
chr4103,158,618103,158,699-3.0834.011CENPEENSG00000138778.14CDS
chr1165,500,93665,500,941+400.0003.769MALAT1ENSG00000251562.10ncRNA
chr1165,500,93065,500,936+400.0003.560MALAT1ENSG00000251562.10ncRNA
chr1165,500,92665,500,928+400.0003.443MALAT1ENSG00000251562.10ncRNA
chr1165,500,91765,500,926+400.0003.229MALAT1ENSG00000251562.10ncRNA
chr194,035,0224,035,154+7.7895.097PIAS4ENSG00000105229.7Distal intron
chr194,035,1544,035,227+3.3473.342PIAS4ENSG00000105229.7Distal intron
chr2249,551,44349,551,517-4.6984.114MIR3667HGENSG00000188511.14ncRNA
chr7149,605,714149,605,859-6.2034.628ZNF767PENSG00000133624.14ncRNA
chr1165,500,75165,500,755+400.0003.747MALAT1ENSG00000251562.10ncRNA
chr28,955,0658,955,222-8.9075.153MBOAT2ENSG00000143797.12Distal intron
chr722,647,24622,647,425-3.5663.343STEAP1BENSG00000105889.16ncRNA
chr4129,079,402129,079,480-5.8723.157SCLT1ENSG00000151466.12Distal intron
chr7121,157,442121,157,559+6.7783.742CPED1ENSG00000106034.18Distal intron
chr1165,501,30865,501,314+400.0003.295MALAT1ENSG00000251562.10ncRNA
chr7121,230,619121,230,692+3.9803.126CPED1ENSG00000106034.18Distal intron
chr1162,518,99962,519,033-4.1923.500AHNAKENSG00000124942.14CDS
chr1165,500,62065,500,624+400.0003.728MALAT1ENSG00000251562.10ncRNA
chr1520,421,12620,421,162-3.2883.795HERC2P3ENSG00000180229.12ncRNA
chr189,257,0089,257,068+3.1023.042ANKRD12ENSG00000101745.17CDS
chr1165,499,13965,499,155+400.0003.783MALAT1ENSG00000251562.10ncRNA
chr1165,499,13265,499,139+400.0003.671MALAT1ENSG00000251562.10ncRNA
chr1165,499,12665,499,132+400.0003.623MALAT1ENSG00000251562.10ncRNA
chr1165,499,15565,499,160+400.0003.485MALAT1ENSG00000251562.10ncRNA
chr1165,499,16065,499,163+400.0003.287MALAT1ENSG00000251562.10ncRNA
chr14101,801,058101,801,130+3.5364.027PPP2R5CENSG00000078304.20Distal intron
chr9100,000,392100,000,438-3.7293.969ERP44ENSG00000023318.9Distal intron
chr1162,523,61762,523,644-3.9803.316AHNAKENSG00000124942.14CDS
chr529,002,33629,002,402+3.6973.812SUCLG2P4ENSG00000249226.1ncRNA
chr1165,500,05865,500,076+400.0003.321MALAT1ENSG00000251562.10ncRNA
chr1165,500,03365,500,053+400.0003.156MALAT1ENSG00000251562.10ncRNA
chr1165,500,05365,500,056+400.0003.073MALAT1ENSG00000251562.10ncRNA
chr2249,569,57249,569,626-3.0833.697MIR3667HGENSG00000188511.14ncRNA
chr890,255,75690,255,792+4.2004.020LINC00534ENSG00000253394.7ncRNA
chr2249,641,55649,641,679-7.9954.854MIR3667HGENSG00000188511.14ncRNA
chr776,598,97076,599,081+4.2004.055LINC03009ENSG00000205485.13ncRNA
chr776,599,08176,599,165+3.7494.040LINC03009ENSG00000205485.13ncRNA
chr6147,299,748147,299,806+3.4923.890STXBP5ENSG00000164506.15Distal intron
chr5138,561,042138,561,048-5.2744.320SNORD63ENSG00000206989.1ncRNA
chr7119,782,729119,782,833-5.4513.525LINC02476ENSG00000225546.6ncRNA
chr890,253,17990,253,253+6.5864.790LINC00534ENSG00000253394.7ncRNA
chr1165,500,76965,500,772+400.0004.256MALAT1ENSG00000251562.10ncRNA
chr1165,500,76065,500,767+400.0004.095MALAT1ENSG00000251562.10ncRNA
chr1165,500,76765,500,769+400.0004.077MALAT1ENSG00000251562.10ncRNA
chr2247,642,11647,642,188+3.3143.727EPIC1ENSG00000224271.8ncRNA
chr347,121,39847,121,459-3.1503.020SETD2ENSG00000181555.22CDS
chr1246,253,920246,254,010-3.0843.638SMYD3ENSG00000185420.19Distal intron
chr1728,674,28028,674,422+3.3143.829SUPT6HENSG00000109111.15CDS
chr2249,622,03649,622,137-4.1073.975MIR3667HGENSG00000188511.14ncRNA
chr6147,297,219147,297,311+9.3815.046STXBP5ENSG00000164506.15Distal intron
chr1165,500,77965,500,793+400.0004.297MALAT1ENSG00000251562.10ncRNA
chr1165,500,77265,500,778+400.0004.268MALAT1ENSG00000251562.10ncRNA
chr1165,499,10865,499,118+400.0003.007MALAT1ENSG00000251562.10ncRNA
chr7140,827,395140,827,467-3.9033.979BRAFENSG00000157764.14Distal intron
chr6147,295,505147,295,586+6.6624.637STXBP5ENSG00000164506.15Distal intron
chr189,257,9009,257,972+3.1213.013ANKRD12ENSG00000101745.17CDS
chr7119,793,001119,793,073-8.9075.187LINC02476ENSG00000225546.6ncRNA
chr7121,247,695121,247,737+5.0924.373CPED1ENSG00000106034.18Distal intron
chr36,583,7936,583,848+3.7023.317ENSG00000189229ENSG00000189229.12ncRNA
chr1262,515,44762,515,571+5.0924.551MON2ENSG00000061987.16Distal intron
chr1720,885,36220,885,412+3.7294.112CCDC144NL-AS1ENSG00000233098.10ncRNA
chr129,178,63229,178,679-3.7773.267SRSF4ENSG00000116350.18Distal intron
chr112,658,0652,658,113-3.4923.867KCNQ1OT1ENSG00000269821.1ncRNA
chr115,403,0755,403,145-5.2744.275HBG2|HBE1ENSG00000196565.15||ENSG00000213931.7Distal intron
chr1758,331,46158,331,525-15.5284.076hsa-mir-142MI0000458miRNA
chr3196,915,304196,915,401+3.6973.864SENP5ENSG00000119231.11Distal intron
chr7119,789,922119,789,969-3.7773.267LINC02476ENSG00000225546.6ncRNA
chr890,258,33690,258,388+10.0814.385LINC00534ENSG00000253394.7ncRNA
chr1165,500,68365,500,685+400.0004.243MALAT1ENSG00000251562.10ncRNA
chr1165,500,69065,500,693+400.0004.102MALAT1ENSG00000251562.10ncRNA
chr1165,500,68565,500,690+400.0004.102MALAT1ENSG00000251562.10ncRNA
chr1165,500,69465,500,698+400.0003.974MALAT1ENSG00000251562.10ncRNA
chr1038,123,07938,123,217+5.5234.517ZNF37AENSG00000075407.193' UTR
chr7119,799,591119,799,642-8.0093.518LINC02476ENSG00000225546.6ncRNA
chr338,233,60138,233,728+3.1023.062OXSR1ENSG00000172939.9Distal intron
chr1214,640,335214,640,431+7.0864.789CENPFENSG00000117724.14CDS
chr7140,831,168140,831,233-4.6234.142BRAFENSG00000157764.14Distal intron
chr337,326,74337,326,819+6.8873.754GOLGA4ENSG00000144674.18CDS
chr2247,769,71847,769,810+3.4733.956EPIC1ENSG00000224271.8ncRNA
chr6166,377,888166,377,970-3.0833.759MPC1ENSG00000060762.19Distal intron
chr1165,500,55965,500,565+400.0003.353MALAT1ENSG00000251562.10ncRNA
chr1165,500,55265,500,556+400.0003.274MALAT1ENSG00000251562.10ncRNA
chr2249,555,97849,556,036-4.8634.131MIR3667HGENSG00000188511.14ncRNA
chr7149,607,097149,607,198-3.5663.441ZNF767PENSG00000133624.14ncRNA
chr1165,500,61265,500,620+400.0003.611MALAT1ENSG00000251562.10ncRNA
chr890,262,55390,262,591+4.8213.329LINC00534ENSG00000253394.7ncRNA
chr7121,231,439121,231,557+4.8213.570CPED1ENSG00000106034.18Distal intron
chr6147,302,462147,302,542+3.8763.413STXBP5ENSG00000164506.15Distal intron
chr7119,791,064119,791,113-6.1784.442LINC02476ENSG00000225546.6ncRNA
chr1165,501,94765,501,965+400.0003.454MALAT1ENSG00000251562.10ncRNA
chr1165,501,94365,501,947+400.0003.404MALAT1ENSG00000251562.10ncRNA
chr1165,501,97065,501,974+400.0003.281MALAT1ENSG00000251562.10ncRNA
chr1165,501,93865,501,943+400.0003.263MALAT1ENSG00000251562.10ncRNA
chr1165,501,96565,501,970+400.0003.256MALAT1ENSG00000251562.10ncRNA
chr1165,501,92765,501,932+400.0003.153MALAT1ENSG00000251562.10ncRNA
chr4129,067,962129,068,035-3.5663.173SCLT1ENSG00000151466.12Distal intron
chr7119,904,205119,904,284-3.7293.986LINC02476ENSG00000225546.6ncRNA
chr1165,500,28765,500,293+400.0004.085MALAT1ENSG00000251562.10ncRNA
chr1165,500,29365,500,296+400.0004.017MALAT1ENSG00000251562.10ncRNA
chr1520,419,63020,419,712-6.1724.410HERC2P3ENSG00000180229.12ncRNA
chr1620,708,36220,708,458+3.7023.099ACSM3ENSG00000005187.12Distal intron
chr2247,788,05247,788,194+6.8874.747EPIC1ENSG00000224271.8ncRNA
chr255,026,85255,026,917-5.6853.603RTN4ENSG00000115310.19CDS
chr36,574,4256,574,476+4.8813.467ENSG00000189229ENSG00000189229.12ncRNA
chr36,574,4846,574,537+4.6203.275ENSG00000189229ENSG00000189229.12ncRNA
chr181,362,1611,362,279-5.3383.035LINC00470ENSG00000132204.14ncRNA
chr7121,247,118121,247,230+5.6793.511CPED1ENSG00000106034.18Distal intron
chr890,254,90390,254,935+3.1023.082LINC00534ENSG00000253394.7ncRNA
chr890,254,27690,254,320+6.5964.641LINC00534ENSG00000253394.7ncRNA
chr1165,500,12765,500,131+400.0004.433MALAT1ENSG00000251562.10ncRNA
chr1246,259,829246,259,914-4.6234.126SMYD3ENSG00000185420.19Distal intron
chr3196,906,983196,907,073+3.7493.993SENP5ENSG00000119231.11Distal intron
chr2167,884,977167,885,094-5.0473.544B3GALT1-AS1ENSG00000235335.3ncRNA
chr4777,146777,224-3.7493.976PCGF3-AS1ENSG00000249592.7ncRNA
chr1620,678,89620,678,949+5.0543.676ACSM3ENSG00000005187.12Distal intron
chr890,254,67390,254,742+8.2794.788LINC00534ENSG00000253394.7ncRNA
chr4767,568767,629-3.4873.198PCGF3-AS1ENSG00000249592.7ncRNA
chr896,230,94596,231,044-3.7294.552UQCRBENSG00000156467.103' UTR
chr1165,502,08265,502,090+400.0003.291MALAT1ENSG00000251562.10ncRNA
chr1165,502,07165,502,082+400.0003.254MALAT1ENSG00000251562.10ncRNA
chr1165,502,06465,502,071+400.0003.068MALAT1ENSG00000251562.10ncRNA
chr2167,884,874167,884,953-3.9653.299B3GALT1-AS1ENSG00000235335.3ncRNA
chr181,364,1601,364,210-3.3143.810LINC00470ENSG00000132204.14ncRNA
chr7119,797,895119,798,032-13.4223.982LINC02476ENSG00000225546.6ncRNA
chr7121,248,292121,248,339+5.3104.419CPED1ENSG00000106034.18Distal intron
chr2151,463,460151,463,517+3.9694.094RIF1ENSG00000080345.18CDS
chr7102,910,033102,910,151-6.4463.254FBXL13ENSG00000161040.18Distal intron
chr255,026,79355,026,821-3.9693.940RTN4ENSG00000115310.19CDS
chr3160,416,359160,416,412+3.0834.103SMC4ENSG00000113810.16CDS
chr2249,613,17849,613,251-3.1213.109ENSG00000235111ENSG00000235111.1ncRNA
chr1770,030,60770,030,690-4.2004.219ENSG00000230258ENSG00000230258.6ncRNA
chr2247,774,42647,774,509+5.2793.495EPIC1ENSG00000224271.8ncRNA
chrX107,067,180107,067,230-3.2883.688RBM41ENSG00000089682.173' UTR
chr1262,515,18062,515,254+3.3143.848MON2ENSG00000061987.16Distal intron
chr7121,257,460121,257,487+3.3143.901CPED1ENSG00000106034.18Distal intron
chr7121,257,396121,257,439+6.0563.233CPED1ENSG00000106034.18Distal intron
chr7121,257,520121,257,606+13.6734.237CPED1ENSG00000106034.18Distal intron
chr7119,795,510119,795,570-9.3183.711LINC02476ENSG00000225546.6ncRNA
chr7119,795,455119,795,510-5.6793.215LINC02476ENSG00000225546.6ncRNA
chr1928,504,89028,504,961-5.9043.157ENSG00000283403|ENSG00000266893|ENSG00000267243ENSG00000266893.1||ENSG00000267243.6||ENSG00000283403.1ncRNA
chr2247,645,66847,645,711+4.7294.178EPIC1ENSG00000224271.8ncRNA
chr2231,460,484231,460,545-6.1244.056NCLENSG00000115053.17CDS
chr776,592,75176,592,793+3.6973.785LINC03009ENSG00000205485.13ncRNA
chr1162,523,15662,523,224-7.8123.129AHNAKENSG00000124942.14CDS
chr4779,974780,077-5.9043.230PCGF3-AS1ENSG00000249592.7ncRNA
chr1647,296,00947,296,071-3.3143.951ITFG1ENSG00000129636.13Distal intron
chr2249,531,66149,531,734-3.5363.757MIR3667HGENSG00000188511.14ncRNA
chr2247,770,91147,771,032+3.4923.975EPIC1ENSG00000224271.8ncRNA
chrX153,691,095153,691,161+7.0463.091SLC6A8ENSG00000130821.17Proximal intron
chr7119,786,648119,786,695-3.1213.167LINC02476ENSG00000225546.6ncRNA
chr890,257,44090,257,512+9.6005.015LINC00534ENSG00000253394.7ncRNA
chr890,257,40590,257,440+4.4204.096LINC00534ENSG00000253394.7ncRNA
chr1162,518,27762,518,323-5.2843.328AHNAKENSG00000124942.14CDS
chr1165,502,71265,502,720+400.0003.014MALAT1ENSG00000251562.10ncRNA
chr1167,776,937167,777,029+3.0833.871MPZL1ENSG00000197965.12Distal intron
chr1620,675,38820,675,443+3.9693.901ACSM3ENSG00000005187.12Distal intron
chr1877,976,77577,976,829-5.0473.446LINC01029ENSG00000265843.3ncRNA
chr1165,504,31865,504,332+400.0003.192MALAT1ENSG00000251562.10ncRNA
chr890,251,84390,251,884+3.4924.032LINC00534ENSG00000253394.7ncRNA
chr78,034,7438,034,863+4.2004.134GLCCI1ENSG00000106415.13Distal intron
chr36,587,8486,587,915+4.5194.055ENSG00000189229ENSG00000189229.12ncRNA
chr2249,643,82249,643,916-7.1014.792MIR3667HGENSG00000188511.14ncRNA
chr181,366,5131,366,588-4.3154.082LINC00470ENSG00000132204.14ncRNA
chr2247,753,58547,753,676+3.8763.091EPIC1ENSG00000224271.8ncRNA
chr141,169,91641,169,979-3.8763.321SCMH1ENSG00000010803.17Distal intron
chr7119,886,678119,886,727-5.0924.186LINC02476ENSG00000225546.6ncRNA

The following table contains identified motifs, where a motif is a short sequence of nucleotides that is significantly enriched in called peaks. Motifs were identified using HOMER's findMotifsGenome.pl tool. Motifs were called at multiple lengths, and results from all examined lengths are aggregated in the table.

The following columns are included in the table:

  •  Motif: logo plot for the identified motif.
  •  IUPAC: sequence of motif in IUPAC code.
  •  Motif length: length of the called motif.
  •  P-value: Significance of the called motif.
  •  -log10(p-value): log transformed significance, a larger number indicates a greater significance.
  •  % Peaks: percent of examined peaks with the identified motif.
  •  % Background: percent of non-peak background regions with the motif.

Please note, this table is interactive. You can search for specific sequences, and can sort the table by any of the columns. The search buttons at thr bottom of the table allow for specific filtering by sequence or motif length.

ENCSR197INS (K562) Motifs


Motif IUPAC sequence Motif length P-value -log10(p-value) % Peaks % Background
GAUGUGGAUGUU121e-1432.350.970.0
GGGUUGGCAGAG121e-1432.350.970.0
URUUAAAGGCCC121e-1227.972.10.11