NOL12

This analysis report summarizes NOL12 eCLIP data from ENCODE. The current tab provides an overview of the results, and the other tabs list identified peaks and motifs.

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Experiment Summary

Experiment ID	File ID	Sample	Antibody source	Antibody ID	Antibody lot	Release date	Laboratory	Number of peaks
ENCSR820DQJ	ENCFF914WFQ	HepG2	Bethyl Labs	A302-733A	1	2016-04-26	Gene Yeo, UCSD	261

NOL12 Peak Assignments

The following plots show the assignment of peaks into different genic features:

Introns contain other subdivisions, please see the subsequent plot for a breakdown of those features.

This plot is interactive. You can hover over the bars to see the percentage and number of identified peaks. You can select which features to show by toggling the region names in the legend, and you can download the plot by moving your mouse to the top of the plot and clicking on the camera icon.

NOL12 Intron Assignments

The following plots show the assignment of peaks into different intronic features:

5’ splice site: the peak is within the first 100 bp of an intron (5’ to 3’ direction
3’ splice site: the peak is within the last 100 bp of an intron (5’ to 3’ direction)
Proximal intron: the peak is within 100 bp to 500 bp of the nearest exon
Distal intron: greater than 500 bp away from the nearest exon

NOL12 Motifs

The following plot shows a summary of the top five motifs by significance in each experiment. Motifs were detected with varying length parameters, you may observe a similar motif with different number of bases included multiple times. A motif present in more peaks and with a higher significance will be in the upper right quadrant of the plot, while the lower left quadrant has motifs that are less significant and in fewer peaks.

No significant motif were identified

The following table contains called NOL12 peaks. To identify peaks, clusters (regions of read enrichment) in the immunoprecipitated (IP) samples were found using the peak calling tool CLIPper. To account for background signal, a cluster was identified as a peak if the log₂ fold enrichment over input was ≥ 3 and the p-value ≤ 0.001.

Peaks were annotated using transcript information from GENCODE. Each annotated peak is labeled with specific annotation feature types, first split by coding and non-coding transcripts, then by transcript regions, and then by intron/exon proximity regions. For overlapping transcript regions, the following hierarchy is used to label the region: coding sequence (CDS), 5’ or 3’ untranslated region (UTR), intron, non-coding exon, then non-coding intron. For example, if a peak is in the 5’ UTR of one transcript that overlaps an intron of another transcript, the peak region will be labeled as 5’ UTR. All gene annotations are from GENCODE release v41.

The following columns are included in the table:

Chromosome: chromosome where the peak is located.
Peak start: start coordinate for the peak.
Peak stop: stop coordinate for the peak.
Strand: strand of DNA where the peak was called.
-log₁₀(p-value): significance of the cluster call by CLIPper. Values are log transformed so a larger number indicates a greater significance.
log₂(fold change): log transformed fold enrichment of the IP signal over a matched input.
Gene name: name (symbol) of the gene that overlaps with the peak.
Ensembl ID: unique identifer of the gene that overlaps with the peak.
Feature: which part of the listed gene overlaps with the peak.

Please note, this table is interactive. You can search for specific genes or features, and can sort the table by any of the columns.

ENCSR820DQJ (HepG2) Peaks

Chromosome	Peak start	Peak stop	Strand	-log₁₀(p-value)	log₂(fold change)	Gene name	Ensembl ID	Feature
chr22_KI270733v1_random	135,083	135,104	+	400.000	8.686	nan	nan	Intergenic
chr8	11,849,096	11,849,165	-	9.507	4.163	CTSB	ENSG00000164733.22	CDS
chr19	49,108,078	49,108,129	+	4.845	3.818	SNRNP70	ENSG00000104852.15	CDS
chr19	11,445,400	11,445,456	+	5.204	3.040	PRKCSH	ENSG00000130175.10	CDS
chr16	18,386,702	18,386,834	-	7.771	3.357	PKD1P5	ENSG00000254681.6	ncRNA
chr6	43,141,933	43,142,052	+	8.413	3.579	PTK7	ENSG00000112655.16	CDS
chr1	1,054,822	1,054,845	+	5.286	4.103	AGRN	ENSG00000188157.15	CDS
chr21	8,401,818	8,401,844	+	400.000	10.993	ENSG00000280441	ENSG00000280441.3	ncRNA
chr21	8,401,813	8,401,818	+	400.000	9.991	ENSG00000280441	ENSG00000280441.3	ncRNA
chr21	8,401,789	8,401,813	+	400.000	9.972	ENSG00000280441	ENSG00000280441.3	ncRNA
chr21	8,401,780	8,401,789	+	400.000	9.098	ENSG00000280441	ENSG00000280441.3	ncRNA
chr17	81,855,221	81,855,227	-	8.535	3.662	P4HB	ENSG00000185624.16	CDS
chr17	28,370,180	28,370,232	-	3.504	3.339	VTN	ENSG00000109072.14	CDS
chr11	119,046,581	119,046,646	-	5.628	3.107	HYOU1	ENSG00000149428.21	CDS
chr9	114,282,488	114,282,531	+	13.473	4.412	COL27A1	ENSG00000196739.15	CDS
chr16	88,657,907	88,657,984	-	6.045	3.092	MVD	ENSG00000167508.12	CDS
chr6	131,950,888	131,950,918	-	15.672	3.083	CCN2	ENSG00000118523.6	CDS
chr6	31,946,531	31,946,552	+	4.409	3.576	CFB\|ENSG00000244255	ENSG00000243649.10\|\|ENSG00000244255.5	CDS
chr12	6,770,156	6,770,212	+	7.697	3.731	PTMS	ENSG00000159335.18	CDS
chr21	45,477,424	45,477,480	+	10.206	3.440	COL18A1	ENSG00000182871.16	CDS
chr20	62,336,356	62,336,428	-	10.330	3.484	LAMA5	ENSG00000130702.15	CDS
chr21	8,397,654	8,397,667	+	18.571	5.739	ENSG00000280441	ENSG00000280441.3	ncRNA
chr21	8,397,667	8,397,672	+	13.197	5.659	ENSG00000280441	ENSG00000280441.3	ncRNA
chr21	8,397,622	8,397,654	+	7.873	4.402	ENSG00000280441	ENSG00000280441.3	ncRNA
chr2	215,435,717	215,435,750	-	400.000	3.048	FN1	ENSG00000115414.21	CDS
chr19	44,908,665	44,908,717	+	56.188	3.928	APOE	ENSG00000130203.10	CDS
chr19	44,908,581	44,908,665	+	57.308	3.117	APOE	ENSG00000130203.10	CDS
chr9	114,240,219	114,240,264	+	8.244	3.014	COL27A1	ENSG00000196739.15	CDS
chr11	17,075,777	17,075,826	-	31.146	3.222	SNORD14B	ENSG00000201403.1	ncRNA
chr9	114,235,598	114,235,607	+	7.721	3.023	COL27A1	ENSG00000196739.15	CDS
chr10	71,829,016	71,829,078	-	14.231	3.296	PSAP	ENSG00000197746.15	CDS
chr6	32,029,253	32,029,306	+	4.754	3.647	C4B	ENSG00000224389.9	CDS
chr2	218,429,848	218,429,945	+	10.002	3.357	VIL1	ENSG00000127831.11	CDS
chr21	8,215,292	8,215,315	+	4.993	4.696	ENSG00000278996	ENSG00000278996.1	ncRNA
chr21	8,215,279	8,215,290	+	3.193	4.319	ENSG00000278996	ENSG00000278996.1	ncRNA
chr9	35,072,363	35,072,415	-	4.936	4.085	VCP	ENSG00000165280.18	5' UTR
chr2	219,543,535	219,543,592	-	5.625	3.370	CHPF	ENSG00000123989.15	CDS
chr12	6,510,500	6,510,543	+	14.280	3.811	SCARNA10\|ENSG00000276232	ENSG00000276232.1\|\|ENSG00000239002.3	ncRNA
chr21	45,480,820	45,480,859	+	6.892	3.002	COL18A1	ENSG00000182871.16	CDS
chr17	82,238,734	82,238,774	+	6.648	3.650	SLC16A3	ENSG00000141526.18	CDS
chr21	45,473,900	45,473,949	+	6.900	3.406	COL18A1	ENSG00000182871.16	CDS
chr4	165,379,187	165,379,297	+	16.067	3.107	CPE	ENSG00000109472.14	CDS
chr9	114,195,963	114,196,010	+	8.955	3.076	COL27A1	ENSG00000196739.15	CDS
chr16	2,752,685	2,752,778	+	12.786	3.131	SRRM2	ENSG00000167978.17	5' UTR
chr6	166,956,377	166,956,436	-	4.786	3.177	RNASET2	ENSG00000026297.17	5' UTR
chr17	1,752,679	1,752,720	+	11.558	3.087	SERPINF2	ENSG00000167711.14	CDS
chr6	31,994,572	31,994,641	+	10.180	3.047	C4A	ENSG00000244731.10	CDS
chr5	139,278,838	139,278,843	+	55.342	3.616	SNORA74A	ENSG00000200959.1	ncRNA
chr5	139,278,843	139,278,859	+	48.546	3.279	SNORA74A	ENSG00000200959.1	ncRNA
chr5	139,278,818	139,278,838	+	59.363	3.073	SNORA74A	ENSG00000200959.1	ncRNA
chr9	114,269,239	114,269,283	+	7.746	3.029	COL27A1	ENSG00000196739.15	CDS
chr17	7,576,882	7,576,938	+	47.198	3.074	SNORD10	ENSG00000238917.1	ncRNA
chr11	75,400,389	75,400,427	+	33.844	3.631	RPS3	ENSG00000149273.15	5' UTR
chr1	11,934,728	11,934,768	+	4.793	3.012	PLOD1	ENSG00000083444.17	5' UTR
chr16	16,321,150	16,321,232	+	7.581	3.718	ENSG00000183889\|PKD1P1	ENSG00000183889.12\|\|ENSG00000244257.5	ncRNA
chr1	44,776,494	44,776,533	+	23.269	3.244	SNORD46	ENSG00000200913.1	ncRNA
chr17	82,237,838	82,237,891	+	14.280	4.040	SLC16A3	ENSG00000141526.18	CDS
chr21	45,477,776	45,477,880	+	13.488	3.155	COL18A1	ENSG00000182871.16	CDS
chr11	75,569,069	75,569,172	+	7.489	3.411	SERPINH1	ENSG00000149257.16	CDS
chr1	43,531,052	43,531,093	+	7.771	3.119	PTPRF	ENSG00000142949.17	5' UTR
chr17	78,972,336	78,972,426	-	21.755	3.073	LGALS3BP	ENSG00000108679.13	CDS
chr14	94,587,447	94,587,505	+	11.829	3.294	SERPINA5	ENSG00000188488.14	CDS
chr1	230,706,152	230,706,193	-	20.852	3.039	AGT	ENSG00000135744.9	CDS
chr1	19,141,646	19,141,668	-	4.993	4.403	UBR4	ENSG00000127481.15	CDS
chr21	45,481,963	45,481,984	+	3.933	3.395	COL18A1	ENSG00000182871.16	CDS
chr8	11,850,897	11,850,981	-	9.166	3.202	CTSB	ENSG00000164733.22	CDS
chr17	66,228,078	66,228,120	-	29.683	3.120	APOH	ENSG00000091583.11	CDS
chr4	165,379,100	165,379,160	+	10.951	3.081	CPE	ENSG00000109472.14	5' UTR
chr1	230,710,421	230,710,484	-	26.931	3.010	AGT	ENSG00000135744.9	CDS
chr20	33,007,721	33,007,761	+	11.836	3.018	BPIFB2	ENSG00000078898.7	5' UTR
chr17	81,957,056	81,957,073	-	9.449	3.166	NOTUM	ENSG00000185269.12	CDS
chr1	173,866,308	173,866,364	-	22.542	4.386	GAS5	ENSG00000234741.10	ncRNA
chr1	230,710,741	230,710,842	-	74.881	3.404	AGT	ENSG00000135744.9	CDS
chr2	219,543,469	219,543,515	-	6.882	3.012	CHPF	ENSG00000123989.15	CDS
chr21	8,210,770	8,210,808	+	51.005	6.764	ENSG00000278996	ENSG00000278996.1	ncRNA
chr21	8,210,808	8,210,820	+	29.085	6.543	ENSG00000278996	ENSG00000278996.1	ncRNA
chr21	8,210,748	8,210,770	+	12.172	6.229	ENSG00000278996	ENSG00000278996.1	ncRNA
chr4	154,585,850	154,585,914	-	15.378	3.085	FGA	ENSG00000171560.17	CDS
chrX	154,366,731	154,366,754	-	4.754	5.379	FLNA	ENSG00000196924.19	CDS
chr10	93,593,835	93,593,842	-	7.771	3.053	RBP4	ENSG00000138207.15	CDS
chr10	93,593,842	93,593,885	-	19.609	3.051	RBP4	ENSG00000138207.15	CDS
chr16	89,773,342	89,773,386	-	6.857	4.986	FANCA	ENSG00000187741.16	CDS
chr16	89,773,287	89,773,342	-	4.845	3.872	FANCA	ENSG00000187741.16	CDS
chr12	57,198,476	57,198,540	+	10.911	3.316	LRP1	ENSG00000123384.14	CDS
chr8	27,604,314	27,604,388	-	12.573	3.373	CLU	ENSG00000120885.22	CDS
chr8	27,604,288	27,604,314	-	5.232	3.193	CLU	ENSG00000120885.22	CDS
chr7	5,362,788	5,362,828	-	5.211	3.010	TNRC18	ENSG00000182095.15	CDS
chr9	125,240,894	125,240,907	-	11.443	3.005	HSPA5	ENSG00000044574.9	CDS
chr5	40,832,665	40,832,719	-	14.068	4.576	SNORD72	ENSG00000212296.1	ncRNA
chr11	116,836,224	116,836,273	-	47.048	3.091	APOA1	ENSG00000118137.10	CDS
chr5	138,561,043	138,561,072	-	32.610	3.498	SNORD63	ENSG00000206989.1	ncRNA
chr5	138,561,072	138,561,104	-	29.501	3.340	SNORD63	ENSG00000206989.1	ncRNA
chr6	43,132,536	43,132,591	+	8.006	4.261	PTK7	ENSG00000112655.16	CDS
chr21	8,218,791	8,218,820	+	210.194	9.154	ENSG00000278996	ENSG00000278996.1	ncRNA
chr21	8,218,745	8,218,783	+	400.000	6.105	ENSG00000278996	ENSG00000278996.1	ncRNA
chr21	8,218,783	8,218,791	+	400.000	6.036	ENSG00000278996	ENSG00000278996.1	ncRNA
chr21	8,218,742	8,218,745	+	28.980	3.180	ENSG00000278996	ENSG00000278996.1	ncRNA
chr20	17,620,714	17,620,767	-	30.423	3.027	RRBP1	ENSG00000125844.17	CDS
chr20	62,310,511	62,310,540	-	7.951	3.518	LAMA5	ENSG00000130702.15	CDS
chr1	35,192,370	35,192,435	-	9.818	3.730	SFPQ	ENSG00000116560.12	CDS
chr11	1,757,396	1,757,436	-	7.951	3.619	CTSD\|ENSG00000250644	ENSG00000117984.15\|\|ENSG00000250644.3	CDS
chr19	6,707,222	6,707,272	-	16.432	3.023	C3	ENSG00000125730.18	CDS
chr3	186,618,584	186,618,604	+	43.467	3.330	AHSG	ENSG00000145192.13	CDS
chr17	81,960,776	81,960,915	-	25.082	3.218	NOTUM	ENSG00000185269.12	CDS
chr21	8,217,983	8,218,035	+	25.092	5.393	ENSG00000278996	ENSG00000278996.1	ncRNA
chr21	8,397,943	8,397,981	+	5.454	5.007	ENSG00000280441	ENSG00000280441.3	ncRNA
chr16	21,520,314	21,520,402	-	8.211	3.079	SLC7A5P2\|SMG1P3	ENSG00000258186.2\|\|ENSG00000180747.15	ncRNA
chr17	2,330,282	2,330,351	-	21.162	3.736	SNORD91A	ENSG00000212163.6	ncRNA
chr21	45,494,900	45,494,915	+	10.997	4.371	COL18A1	ENSG00000182871.16	CDS
chr2	202,293,067	202,293,140	+	12.198	3.537	SNORD11	ENSG00000238317.2	ncRNA
chr14	75,604,204	75,604,210	+	19.745	6.805	ENSG00000280494\|RNA5SP387	ENSG00000280494.2\|\|ENSG00000201096.1	ncRNA
chr14	75,604,210	75,604,234	+	19.053	4.955	RNA5SP387\|ENSG00000280494	ENSG00000280494.2\|\|ENSG00000201096.1	ncRNA
chr14	75,604,234	75,604,243	+	18.571	4.895	ENSG00000280494\|RNA5SP387	ENSG00000280494.2\|\|ENSG00000201096.1	ncRNA
chr11	119,095,005	119,095,063	-	3.504	3.082	H2AX	ENSG00000188486.4	CDS
chr21	45,468,739	45,468,782	+	14.039	3.901	COL18A1	ENSG00000182871.16	CDS
chr6	30,730,928	30,731,063	-	6.179	3.959	FLOT1	ENSG00000137312.15	CDS
chr9	114,265,088	114,265,109	+	11.221	3.491	COL27A1	ENSG00000196739.15	CDS
chr22	36,288,344	36,288,399	-	6.576	3.023	MYH9	ENSG00000100345.23	CDS
chr21	45,495,421	45,495,433	+	6.124	3.655	COL18A1	ENSG00000182871.16	CDS
chr9	114,252,883	114,252,931	+	8.133	3.190	COL27A1	ENSG00000196739.15	CDS
chr4	82,895,854	82,895,913	-	6.915	4.618	THAP9-AS1	ENSG00000251022.6	ncRNA
chr16	88,785,147	88,785,169	-	5.648	3.838	PIEZO1	ENSG00000103335.22	5' UTR
chr22	36,301,542	36,301,581	-	4.168	3.074	MYH9	ENSG00000100345.23	CDS
chr1	183,023,819	183,023,856	+	3.812	3.468	LAMC1	ENSG00000135862.6	CDS
chr11	119,051,033	119,051,108	-	5.628	3.042	HYOU1	ENSG00000149428.21	CDS
chr10	100,352,376	100,352,422	+	12.951	3.138	SCD	ENSG00000099194.6	CDS
chr11	75,400,486	75,400,524	+	13.336	4.035	RPS3	ENSG00000149273.15	5' UTR
chr6	31,835,290	31,835,327	+	5.523	3.706	SNHG32\|SNORD48	ENSG00000201823.1\|\|ENSG00000204387.14	ncRNA
chr4	1,806,618	1,806,641	+	4.754	3.556	FGFR3	ENSG00000068078.20	CDS
chr20	49,280,344	49,280,378	+	81.692	3.031	ZFAS1\|SNORD12B	ENSG00000177410.13\|\|ENSG00000222365.1	ncRNA
chr4	1,807,564	1,807,587	+	5.895	3.528	FGFR3	ENSG00000068078.20	3' UTR
chr20	62,827,257	62,827,292	+	7.420	3.588	COL9A3	ENSG00000092758.18	CDS
chr19	893,552	893,588	+	46.270	4.389	RNU6-9	ENSG00000207507.1	ncRNA
chr17	82,235,981	82,236,006	+	10.630	3.294	SLC16A3	ENSG00000141526.18	5' UTR
chr17	1,771,900	1,771,957	+	18.370	3.295	SERPINF1	ENSG00000132386.11	CDS
chr21	8,209,179	8,209,232	+	5.725	6.554	ENSG00000278996	ENSG00000278996.1	ncRNA
chr3	186,620,802	186,620,833	+	27.590	3.285	AHSG	ENSG00000145192.13	CDS
chr1	35,187,206	35,187,252	-	7.362	3.178	SFPQ	ENSG00000116560.12	CDS
chr21	45,495,357	45,495,380	+	10.909	4.186	COL18A1	ENSG00000182871.16	CDS
chr9	114,061,554	114,061,588	-	28.631	3.446	AMBP	ENSG00000106927.12	CDS
chr1	19,164,252	19,164,303	-	5.605	3.597	UBR4	ENSG00000127481.15	CDS
chr7	45,888,891	45,888,965	+	16.122	3.447	IGFBP1	ENSG00000146678.10	CDS
chr7	45,888,639	45,888,754	+	34.014	3.322	IGFBP1	ENSG00000146678.10	CDS
chr7	45,888,754	45,888,891	+	43.996	3.284	IGFBP1	ENSG00000146678.10	CDS
chr21	45,490,277	45,490,330	+	12.391	3.588	COL18A1	ENSG00000182871.16	CDS
chr17	28,720,574	28,720,608	+	30.994	3.314	RPL23A	ENSG00000198242.14	5' UTR
chr9	114,300,080	114,300,123	+	13.181	3.291	COL27A1	ENSG00000196739.15	CDS
chr6	166,956,477	166,956,517	-	4.822	3.371	RNASET2	ENSG00000026297.17	5' UTR
chr17	43,290,295	43,290,351	-	5.605	3.543	U2	ENSG00000274452.1	ncRNA
chr9	114,265,421	114,265,461	+	9.370	3.041	COL27A1	ENSG00000196739.15	CDS
chr17	76,561,113	76,561,148	+	12.748	3.762	SNORD1B	ENSG00000199961.1	ncRNA
chr7	48,632,752	48,632,815	+	6.213	5.507	ABCA13	ENSG00000179869.15	Distal intron
chr1	156,384,429	156,384,488	+	6.952	3.071	RHBG	ENSG00000132677.13	3' splice site
chr9	114,235,635	114,235,652	+	15.511	3.593	COL27A1	ENSG00000196739.15	CDS
chr9	114,235,607	114,235,635	+	13.181	3.219	COL27A1	ENSG00000196739.15	CDS
chr3	133,756,281	133,756,327	+	41.765	3.141	TF	ENSG00000091513.16	CDS
chr9	114,245,865	114,245,882	+	8.966	3.154	COL27A1	ENSG00000196739.15	CDS
chr6	31,271,669	31,271,759	-	6.928	3.319	HLA-C	ENSG00000204525.18	CDS
chr20	62,829,768	62,829,819	+	13.483	3.694	COL9A3	ENSG00000092758.18	CDS
chr7	5,370,867	5,370,986	-	8.557	3.018	TNRC18	ENSG00000182095.15	CDS
chr2	202,276,461	202,276,500	+	18.984	3.484	SNORD70	ENSG00000212534.1	ncRNA
chr1	236,064,888	236,065,057	-	16.047	3.293	NID1	ENSG00000116962.15	CDS
chr20	33,008,545	33,008,560	+	16.505	3.718	BPIFB2	ENSG00000078898.7	5' UTR
chr20	62,829,627	62,829,680	+	17.531	3.594	COL9A3	ENSG00000092758.18	CDS
chr1	1,050,441	1,050,467	+	4.822	3.371	AGRN	ENSG00000188157.15	CDS
chr21	8,213,743	8,213,777	+	8.760	5.410	ENSG00000278996	ENSG00000278996.1	ncRNA
chr12	57,177,450	57,177,471	+	4.754	5.503	LRP1	ENSG00000123384.14	CDS
chr12	57,177,516	57,177,527	+	3.193	3.735	LRP1	ENSG00000123384.14	CDS
chr19	6,710,723	6,710,778	-	24.134	3.225	C3	ENSG00000125730.18	CDS
chr21	45,480,073	45,480,122	+	5.211	3.679	COL18A1	ENSG00000182871.16	CDS
chr16	2,768,060	2,768,066	+	4.754	5.109	SRRM2	ENSG00000167978.17	CDS
chr1	173,866,879	173,866,892	-	45.927	3.410	GAS5	ENSG00000234741.10	ncRNA
chr1	173,866,892	173,866,918	-	44.193	3.103	GAS5	ENSG00000234741.10	ncRNA
chr2	219,570,681	219,570,752	-	9.473	4.391	OBSL1	ENSG00000124006.15	CDS
chr16	71,758,440	71,758,483	-	5.632	3.453	SNORD71	ENSG00000223224.1	ncRNA
chr3	58,121,432	58,121,499	+	13.218	3.551	FLNB	ENSG00000136068.16	CDS
chr20	62,328,304	62,328,342	-	9.166	3.275	LAMA5	ENSG00000130702.15	CDS
chr19	3,360,216	3,360,220	+	4.754	5.283	NFIC	ENSG00000141905.19	Distal intron
chr19	3,360,220	3,360,242	+	4.754	5.283	NFIC	ENSG00000141905.19	Distal intron
chr1	19,186,613	19,186,659	-	6.038	3.895	UBR4	ENSG00000127481.15	CDS
chr9	114,069,699	114,069,709	-	14.707	3.051	AMBP	ENSG00000106927.12	CDS
chr12	57,156,801	57,156,854	+	7.805	3.923	LRP1	ENSG00000123384.14	CDS
chr11	68,043,294	68,043,355	+	5.273	3.371	TCIRG1	ENSG00000110719.11	5' UTR
chr20	17,962,828	17,962,832	-	400.000	3.293	SNORD17	ENSG00000212232.1	ncRNA
chr1	173,864,872	173,864,904	-	15.140	3.159	GAS5	ENSG00000234741.10	ncRNA
chr9	114,236,980	114,236,986	+	10.330	3.562	COL27A1	ENSG00000196739.15	CDS
chr9	114,236,986	114,237,029	+	16.544	3.247	COL27A1	ENSG00000196739.15	CDS
chr20	62,832,153	62,832,176	+	7.298	3.023	COL9A3	ENSG00000092758.18	CDS
chr19	6,686,159	6,686,189	-	21.998	3.350	C3	ENSG00000125730.18	CDS
chr9	114,290,242	114,290,328	+	12.694	3.494	COL27A1	ENSG00000196739.15	CDS
chr7	2,631,983	2,632,092	+	14.231	3.296	TTYH3	ENSG00000136295.15	5' UTR
chr1	1,045,432	1,045,489	+	7.358	4.196	AGRN	ENSG00000188157.15	CDS
chr9	114,183,050	114,183,072	+	5.644	3.381	COL27A1	ENSG00000196739.15	CDS
chr9	114,270,727	114,270,781	+	6.960	3.053	COL27A1	ENSG00000196739.15	CDS
chr9	125,241,004	125,241,047	-	23.258	3.400	HSPA5	ENSG00000044574.9	CDS
chr9	125,241,062	125,241,112	-	26.379	3.193	HSPA5	ENSG00000044574.9	CDS
chr21	8,398,360	8,398,364	+	7.688	5.737	ENSG00000280441	ENSG00000280441.3	ncRNA
chr21	8,398,367	8,398,381	+	7.688	5.737	ENSG00000280441	ENSG00000280441.3	ncRNA
chr17	81,846,433	81,846,449	-	12.290	3.488	P4HB	ENSG00000185624.16	CDS
chr6	131,950,495	131,950,518	-	10.455	3.163	CCN2	ENSG00000118523.6	CDS
chr21	8,391,751	8,391,788	+	5.238	5.986	ENSG00000280441	ENSG00000280441.3	ncRNA
chr3	49,122,940	49,123,008	-	6.576	3.304	LAMB2	ENSG00000172037.14	CDS
chr21	45,476,467	45,476,475	+	5.286	4.311	COL18A1	ENSG00000182871.16	CDS
chr1	11,926,242	11,926,288	-	8.200	4.248	KIAA2013	ENSG00000116685.16	5' UTR
chr21	45,487,447	45,487,495	+	6.884	3.470	COL18A1	ENSG00000182871.16	CDS
chr1	109,100,434	109,100,469	+	25.412	3.080	SCARNA2\|ENSG00000270066	ENSG00000278249.1\|\|ENSG00000270066.3	ncRNA
chr19	18,388,668	18,388,737	+	10.540	3.693	GDF15	ENSG00000130513.7	CDS
chr19	18,388,553	18,388,598	+	4.377	3.405	GDF15	ENSG00000130513.7	CDS
chr20	62,315,061	62,315,112	-	6.884	3.374	LAMA5	ENSG00000130702.15	CDS
chr21	45,492,694	45,492,713	+	4.374	3.395	COL18A1	ENSG00000182871.16	CDS
chr5	109,699,737	109,699,784	-	6.703	5.453	RN7SKP230	ENSG00000202512.1	ncRNA
chr20	41,172,235	41,172,283	+	5.454	4.457	PLCG1	ENSG00000124181.15	CDS
chr9	114,288,934	114,288,966	+	3.612	3.023	COL27A1	ENSG00000196739.15	CDS
chr16	14,920,317	14,920,387	+	8.223	4.749	PKD1P3	ENSG00000183458.14	ncRNA
chr2	96,816,639	96,816,742	+	4.428	3.011	CNNM3	ENSG00000168763.16	CDS
chr1	1,044,333	1,044,372	+	7.581	3.753	AGRN	ENSG00000188157.15	CDS
chr8	11,847,737	11,847,823	-	11.288	3.435	CTSB	ENSG00000164733.22	CDS
chr6	119,349,124	119,349,161	-	13.473	3.797	MAN1A1	ENSG00000111885.7	5' UTR
chr20	62,314,802	62,314,828	-	10.911	3.345	LAMA5	ENSG00000130702.15	CDS
chr9	125,241,271	125,241,293	-	10.540	3.379	HSPA5	ENSG00000044574.9	5' UTR
chr1	30,968,219	30,968,237	-	3.514	3.629	PUM1	ENSG00000134644.16	Proximal intron
chr1	30,968,196	30,968,219	-	9.379	3.378	PUM1	ENSG00000134644.16	Proximal intron
chr1	30,968,164	30,968,196	-	7.861	3.026	PUM1	ENSG00000134644.16	Proximal intron
chr1	42,928,932	42,928,972	-	19.531	3.625	SLC2A1	ENSG00000117394.24	CDS
chr20	17,627,600	17,627,656	-	17.924	3.076	RRBP1	ENSG00000125844.17	CDS
chr17	76,561,654	76,561,689	+	31.690	3.639	SNORD1A\|SNHG16	ENSG00000278261.1\|\|ENSG00000163597.17	ncRNA
chr2	202,278,142	202,278,186	+	21.246	3.408	SNORD70B	ENSG00000212309.1	ncRNA
chr3	186,613,341	186,613,353	+	24.536	3.031	AHSG	ENSG00000145192.13	CDS
chr17	19,062,087	19,062,136	+	14.687	7.340	SNORD3B-1	ENSG00000265185.6	ncRNA
chr9	114,243,544	114,243,561	+	6.053	3.274	COL27A1	ENSG00000196739.15	CDS
chr9	114,243,519	114,243,544	+	5.352	3.029	COL27A1	ENSG00000196739.15	CDS
chr20	326,540	326,581	-	5.919	5.168	NRSN2-AS1	ENSG00000225377.6	ncRNA
chr8	144,414,746	144,414,838	-	7.545	4.269	SLC39A4	ENSG00000147804.10	CDS
chr1	43,538,196	43,538,243	+	9.554	3.855	PTPRF	ENSG00000142949.17	5' UTR
chr19	44,908,737	44,908,783	+	18.085	3.302	APOE	ENSG00000130203.10	CDS
chr1	230,704,304	230,704,337	-	17.985	3.040	AGT	ENSG00000135744.9	CDS
chr16	3,371,976	3,372,030	-	6.387	4.911	nan	nan	Intergenic
chr17	78,973,093	78,973,111	-	7.090	3.477	LGALS3BP	ENSG00000108679.13	CDS
chr19	51,346,932	51,347,008	-	8.967	3.018	ETFB	ENSG00000105379.10	CDS
chr14	94,592,066	94,592,121	+	7.519	3.188	SERPINA5	ENSG00000188488.14	CDS
chr20	37,203,885	37,203,930	+	9.449	3.090	RPN2	ENSG00000118705.17	CDS
chr9	133,349,440	133,349,469	+	31.607	3.089	SNORD24	ENSG00000206611.1	ncRNA
chr1	1,045,240	1,045,276	+	4.793	3.401	AGRN	ENSG00000188157.15	CDS
chr9	114,311,046	114,311,064	+	4.783	3.088	COL27A1	ENSG00000196739.15	3' UTR
chr7	100,687,813	100,687,885	-	5.177	3.603	GIGYF1	ENSG00000146830.11	CDS
chr16	2,114,167	2,114,212	-	4.754	3.688	PKD1	ENSG00000008710.20	CDS
chr8	56,993,612	56,993,736	-	4.083	4.379	BPNT2	ENSG00000104331.9	5' UTR
chr2	11,344,413	11,344,597	-	15.290	3.256	ROCK2	ENSG00000134318.16	5' UTR
chr2	219,571,321	219,571,402	-	8.611	3.303	OBSL1	ENSG00000124006.15	5' UTR
chr3	133,753,624	133,753,699	+	54.195	3.237	TF	ENSG00000091513.16	CDS
chr9	114,078,166	114,078,212	-	37.572	3.159	AMBP	ENSG00000106927.12	CDS
chr9	114,078,135	114,078,166	-	40.456	3.102	AMBP	ENSG00000106927.12	CDS
chr6	43,770,880	43,770,941	+	3.514	3.318	VEGFA	ENSG00000112715.26	CDS
chr19	44,909,001	44,909,046	+	54.713	3.464	APOE	ENSG00000130203.10	CDS
chr19	44,909,046	44,909,089	+	41.493	3.208	APOE	ENSG00000130203.10	CDS
chr19	44,908,806	44,908,937	+	51.304	3.130	APOE	ENSG00000130203.10	CDS
chr19	44,908,937	44,909,001	+	28.558	3.054	APOE	ENSG00000130203.10	CDS
chr22	41,301,718	41,301,775	+	5.477	3.437	ZC3H7B	ENSG00000100403.12	5' UTR
chr17	81,845,943	81,845,990	-	25.310	3.699	P4HB	ENSG00000185624.16	CDS
chr17	47,975,230	47,975,300	+	7.031	3.294	CDK5RAP3	ENSG00000108465.15	CDS
chr16	1,965,259	1,965,294	+	9.938	3.714	SNHG9\|SNORA78	ENSG00000273587.1\|\|ENSG00000255198.6	ncRNA

The following table contains identified motifs, where a motif is a short sequence of nucleotides that is significantly enriched in called peaks. Motifs were identified using HOMER's findMotifsGenome.pl tool. Motifs were called at multiple lengths, and results from all examined lengths are aggregated in the table.

The following columns are included in the table:

Motif: logo plot for the identified motif.
IUPAC: sequence of motif in IUPAC code.
Motif length: length of the called motif.
P-value: Significance of the called motif.
-log₁₀(p-value): log transformed significance, a larger number indicates a greater significance.
% Peaks: percent of examined peaks with the identified motif.
% Background: percent of non-peak background regions with the motif.

Please note, this table is interactive. You can search for specific sequences, and can sort the table by any of the columns. The search buttons at thr bottom of the table allow for specific filtering by sequence or motif length.

ENCSR820DQJ (HepG2) Motifs

No significant motif were identified