RBFOX2 eCLIP

TABLE OF CONTENTS



Peak Information Table



Clusters are found using the peak calling tool CLIPper. The clusters identified in the IP sample are then normalized against a paired input sample. A peak is defined as a cluster with log2 fold enrichment ≥ 3 and p-value ≤ 0.001. The table below shows information about each peak. The log2 fold change refers to the fold enrichment in eCLIP versus the paired input determined by Yates' Chi-square Test or Fisher's Exact Test.

BrowseChromosome Start End -log10(P-value) Log2 Fold Change Strand Gene Ensembl ID Feature
chr9128,233,213128,233,31583.3974.631+DNM1ENSG00000106976.21Distal intron
chr9128,233,383128,233,44471.7375.132+DNM1ENSG00000106976.21Distal intron
chr9136,889,854136,889,97469.3265.808+TRAF2ENSG00000127191.18Proximal intron
chr9128,233,444128,233,48964.1485.122+DNM1ENSG00000106976.21Distal intron
chr9136,890,098136,890,23046.8386.212+TRAF2ENSG00000127191.18Proximal intron
chr9128,233,315128,233,36444.4754.494+DNM1ENSG00000106976.21Distal intron
chr9128,232,960128,233,10140.4695.039+DNM1ENSG00000106976.21Distal intron
chr961,984,18861,984,32139.7545.452+CR769775.2ENSG00000284471.1Noncoding exon
chr9128,232,719128,232,83139.0324.458+DNM1ENSG00000106976.21Distal intron
chr9128,233,489128,233,57932.0763.953+DNM1ENSG00000106976.21Proximal intron
chr9136,889,776136,889,85432.0435.170+TRAF2ENSG00000127191.185' splice site
chr9128,233,828128,233,89430.7824.754+DNM1ENSG00000106976.21Proximal intron
chr9128,233,579128,233,68026.1084.452+DNM1ENSG00000106976.21Proximal intron
chr9128,233,134128,233,17025.0154.499+DNM1ENSG00000106976.21Distal intron
chr9128,233,170128,233,21324.7104.380+DNM1ENSG00000106976.21Distal intron
chr9128,233,364128,233,38324.5894.609+DNM1ENSG00000106976.21Distal intron
chr961,984,08861,984,18824.4586.267+CR769775.2ENSG00000284471.1Noncoding exon
chr9128,233,754128,233,80424.2026.245+DNM1ENSG00000106976.21Proximal intron
chr9136,890,004136,890,06923.5196.212+TRAF2ENSG00000127191.18Proximal intron
chr961,983,98761,984,08322.2864.352+CR769775.2ENSG00000284471.1Noncoding exon
chr9133,350,857133,350,91321.1534.177+SNORD36CENSG00000252542.1Noncoding exon
chr9136,890,254136,890,32019.5675.056+TRAF2ENSG00000127191.183' splice site
chr9128,232,897128,232,92918.2695.881+DNM1ENSG00000106976.21Distal intron
chr9131,490,289131,490,35517.3273.319+PRRC2BENSG00000130723.20Distal intron
chr9128,224,127128,224,24217.2603.572+DNM1ENSG00000106976.213' splice site
chr9136,887,493136,887,62117.2433.207+TRAF2ENSG00000127191.18Distal intron
chr9136,888,513136,888,64617.2244.380+TRAF2ENSG00000127191.18Distal intron
chr9136,890,230136,890,25416.9025.762+TRAF2ENSG00000127191.183' splice site
chr9130,632,414130,632,56416.5524.339+FUBP3ENSG00000107164.16Proximal intron
chr9136,890,069136,890,09816.1665.715+TRAF2ENSG00000127191.18Proximal intron
chr9128,223,074128,223,17115.6334.762+DNM1ENSG00000106976.21Proximal intron
chr994,179,34294,179,44315.4273.999+hsa-let-7dMI0000065miRNA proximal
chr9128,224,570128,224,66514.0783.482+DNM1ENSG00000106976.21Proximal intron
chr9136,826,543136,826,63013.6123.289+RABL6ENSG00000196642.19Distal intron
chr9128,224,803128,224,90113.4073.141+DNM1ENSG00000106976.21Proximal intron
chr9130,633,448130,633,56913.3244.563+FUBP3ENSG00000107164.16Distal intron
chr9133,421,338133,421,43212.9144.030+ADAMTS13ENSG00000160323.18Distal intron (ncRNA)
chr9131,490,355131,490,40312.2863.042+PRRC2BENSG00000130723.20Distal intron
chr9136,893,340136,893,49411.7024.393+TRAF2ENSG00000127191.18Distal intron
chr976,571,76176,571,78511.3943.406+GCNT1ENSG00000187210.14Distal intron (ncRNA)
chr9130,633,184130,633,32611.2683.545+FUBP3ENSG00000107164.16Distal intron
chr9131,481,998131,482,11511.2683.545+PRRC2BENSG00000130723.20Proximal intron
chr9128,222,988128,223,07411.1423.380+DNM1ENSG00000106976.21Proximal intron
chr9128,233,942128,233,97211.1423.380+DNM1ENSG00000106976.213' splice site
chr9130,632,573130,632,72210.9343.184+FUBP3ENSG00000107164.16Proximal intron
chr993,303,55093,303,64710.8923.828+WNK2ENSG00000165238.16Distal intron
chr9136,826,244136,826,33910.7633.339+RABL6ENSG00000196642.19Proximal intron
chr9133,421,651133,421,76710.1333.267+ADAMTS13ENSG00000160323.18Distal intron (ncRNA)
chr993,302,60693,302,7339.9933.726+WNK2ENSG00000165238.16Distal intron
chr9136,826,390136,826,4539.8403.440+RABL6ENSG00000196642.19Distal intron
chr9133,421,432133,421,5029.6454.154+ADAMTS13ENSG00000160323.18Distal intron (ncRNA)
chr9136,793,042136,793,1659.4304.130+TMEM141ENSG00000244187.83' UTR
chr9130,633,611130,633,7059.2084.106+FUBP3ENSG00000107164.16Distal intron
chr9131,490,403131,490,4699.0803.344+PRRC2BENSG00000130723.20Distal intron
chr9136,889,743136,889,7768.8613.615+TRAF2ENSG00000127191.185' splice site
chr9136,826,973136,827,0668.3223.241+RABL6ENSG00000196642.19Distal intron
chr9131,408,106131,408,1578.3013.978+PRRC2BENSG00000130723.20Distal intron
chr9125,756,538125,756,6398.2283.521+PBX3ENSG00000167081.18Distal intron
chr9131,407,223131,407,2988.0693.205+PRRC2BENSG00000130723.20Distal intron
chr933,304,41733,304,5147.6093.867+NFX1ENSG00000086102.19Distal intron
chr9136,893,246136,893,3407.5813.419+TRAF2ENSG00000127191.18Distal intron
chr993,580,86493,580,9817.3973.838+PHF2ENSG00000197724.11Distal intron
chr9128,225,461128,225,5147.3743.081+DNM1ENSG00000106976.21Distal intron
chr9129,005,016129,005,1407.2684.683+NUP188ENSG00000095319.143' splice site
chr9130,633,705130,633,8167.1873.071+FUBP3ENSG00000107164.16Distal intron
chr9131,406,964131,407,0437.1643.056+PRRC2BENSG00000130723.20Distal intron
chr977,348,44577,348,5747.1263.366+VPS13AENSG00000197969.14Distal intron
chr977,212,01977,212,1386.9503.778+VPS13AENSG00000197969.14Distal intron
chr9136,888,718136,888,7936.9503.778+TRAF2ENSG00000127191.18Distal intron
chr9136,891,553136,891,6386.9223.311+TRAF2ENSG00000127191.18Distal intron
chr935,756,52135,756,5736.8344.581+RGP1ENSG00000107185.103' UTR
chr9136,889,232136,889,2856.6004.545+TRAF2ENSG00000127191.18Distal intron
chr938,398,12038,398,2736.4973.683+ALDH1B1ENSG00000137124.83' UTR
chr9136,890,508136,890,5276.4973.683+TRAF2ENSG00000127191.185' UTR
chr9131,407,977131,408,0396.4923.253+PRRC2BENSG00000130723.20Distal intron
chr9136,888,793136,888,8606.4713.715+TRAF2ENSG00000127191.18Distal intron
chr9128,225,828128,225,8596.2663.223+DNM1ENSG00000106976.21Proximal intron
chr9136,886,769136,886,7896.1294.433+hsa-mir-4479MI0016838miRNA
chr993,304,23993,304,3196.0553.162+WNK2ENSG00000165238.16Distal intron
chr9136,828,373136,828,4275.8483.130+RABL6ENSG00000196642.193' splice site
chr9133,350,849133,350,8545.8323.581+SNORD36CENSG00000252542.1Noncoding exon
chr9134,329,881134,330,0295.6343.098+RXRAENSG00000186350.12Distal intron
chr9136,826,366136,826,3905.6053.508+RABL6ENSG00000196642.19Distal intron
chr979,599,28979,599,3735.1974.267+TLE4ENSG00000106829.20Distal intron
chr977,334,12377,334,2894.9543.393+VPS13AENSG00000197969.14Distal intron
chr993,671,08593,671,2104.9543.393+PHF2ENSG00000197724.11Distal intron
chr9136,792,566136,792,6694.7233.352+TMEM141ENSG00000244187.8Proximal intron
chr9130,632,302130,632,3554.7233.352+FUBP3ENSG00000107164.165' splice site
chr9136,833,444136,833,4774.4853.311+RABL6ENSG00000196642.193' UTR
chr993,580,98193,581,0584.3043.223+PHF2ENSG00000197724.11Distal intron
chr9130,633,854130,633,9044.3043.223+FUBP3ENSG00000107164.16Distal intron
chr9133,421,543133,421,5884.3043.223+ADAMTS13ENSG00000160323.18Distal intron (ncRNA)
chr9128,807,644128,807,7844.0863.177+TBC1D13ENSG00000107021.163' splice site
chr993,542,73793,542,8754.0863.177+FAM120AENSG00000048828.17Proximal intron
chr9137,608,817137,608,9414.0863.177+ARRDC1ENSG00000197070.14Distal intron
chr979,692,63079,692,6934.0863.177+TLE4ENSG00000106829.20Distal intron
chr9134,356,409134,356,4984.0673.924+RXRAENSG00000186350.12Distal intron
chr9128,460,136128,460,2054.0673.924+ODF2ENSG00000136811.165' UTR
chr9136,893,113136,893,1804.0463.978+TRAF2ENSG00000127191.18Distal intron
chr9134,353,259134,353,3953.8613.130+RXRAENSG00000186350.12Distal intron
chr9137,805,102137,805,1843.8503.867+EHMT1ENSG00000181090.21Distal intron
chr933,296,34433,296,4103.8503.867+NFX1ENSG00000086102.19Distal intron
chr993,301,73493,301,7873.8503.867+WNK2ENSG00000165238.16Distal intron
chr9121,731,901121,732,0033.6503.030+DAB2IPENSG00000136848.17Distal intron
chr933,303,82633,303,8823.6503.030+NFX1ENSG00000086102.19Distal intron
chr993,635,83493,635,9533.6303.081+PHF2ENSG00000197724.11Proximal intron
chr9131,419,396131,419,4613.6303.081+PRRC2BENSG00000130723.20Distal intron
chr998,836,69198,836,8083.3923.747+GALNT12ENSG00000119514.7Proximal intron
chr9113,905,768113,905,8593.3923.747+ZNF618ENSG00000157657.14Distal intron
chr937,152,62737,152,6993.3923.747+ZCCHC7ENSG00000147905.18Distal intron
chr9129,004,952129,005,0163.3923.747+NUP188ENSG00000095319.14Proximal intron
chr9136,720,646136,720,6833.3923.747+DIPK1BENSG00000165716.11Distal intron
chr977,333,95577,334,0533.1583.615+VPS13AENSG00000197969.14Distal intron
chr9137,815,534137,815,6193.1583.615+EHMT1ENSG00000181090.21Proximal intron
chr993,631,69493,631,7663.1583.615+PHF2ENSG00000197724.11Distal intron
chr993,208,78893,208,8703.1523.683+WNK2ENSG00000165238.16Distal intron
chr9127,787,113127,787,1933.1523.683+CDK9ENSG00000136807.14Proximal intron
chr992,713,58692,713,72935.4084.930-BICD2ENSG00000185963.143' UTR
chr9128,821,115128,821,24326.8883.850-AL441992.2|SPOUT1ENSG00000286112.1||ENSG00000198917.133' UTR
chr9128,821,038128,821,11523.7625.300-SPOUT1|AL441992.2ENSG00000286112.1||ENSG00000198917.133' UTR
chr9137,010,359137,010,47121.4263.838-ABCA2ENSG00000107331.17CDS
chr9128,821,342128,821,41520.0084.223-SPOUT1|AL441992.2ENSG00000286112.1||ENSG00000198917.133' UTR
chr9128,821,243128,821,34219.6573.731-AL441992.2|SPOUT1ENSG00000286112.1||ENSG00000198917.133' UTR
chr9128,118,623128,118,69019.0513.553-SLC25A25-AS1ENSG00000234771.3Noncoding exon
chr9128,821,432128,821,54718.8444.496-SPOUT1|AL441992.2ENSG00000198917.13||ENSG00000286112.13' UTR
chr9128,820,807128,820,91018.6454.991-SPOUT1|AL441992.2ENSG00000286112.1||ENSG00000198917.133' UTR
chr9137,040,163137,040,27018.5823.108-NPDC1ENSG00000107281.105' splice site
chr992,715,05292,715,15917.9714.093-BICD2ENSG00000185963.14CDS
chr9128,820,964128,821,03817.8475.838-AL441992.2|SPOUT1ENSG00000286112.1||ENSG00000198917.133' UTR
chr9125,126,271125,126,49716.3303.848-SCAIENSG00000173611.18Distal intron
chr983,976,48983,976,53915.0473.881-HNRNPKENSG00000165119.21Proximal intron
chr9129,011,835129,011,96814.9073.263-SH3GLB2ENSG00000148341.18Proximal intron
chr9137,010,508137,010,60414.7093.535-ABCA2ENSG00000107331.175' splice site
chr9133,856,357133,856,49814.2424.649-VAV2ENSG00000160293.17Distal intron
chr9129,010,838129,010,90813.6014.098-SH3GLB2ENSG00000148341.18Proximal intron
chr935,092,05435,092,15513.1284.064-PIGOENSG00000165282.14CDS
chr935,092,44835,092,53912.6555.373-PIGOENSG00000165282.14CDS
chr983,976,44083,976,48912.5313.521-HNRNPKENSG00000165119.21Distal intron
chr9125,126,511125,126,62411.7093.598-SCAIENSG00000173611.18Distal intron
chr9129,010,966129,011,07311.3943.406-SH3GLB2ENSG00000148341.18Proximal intron
chr935,092,24835,092,37210.6763.808-PIGOENSG00000165282.14CDS
chr935,092,15535,092,20810.1164.223-PIGOENSG00000165282.14CDS
chr992,714,66992,714,73810.0915.081-BICD2ENSG00000185963.143' UTR
chr992,250,40492,250,5129.9613.413-IARS1ENSG00000196305.18Proximal intron
chr9137,023,238137,023,3359.2084.106-ABCA2ENSG00000107331.17Proximal intron
chr9133,341,968133,342,0909.2073.361-MED22ENSG00000148297.163' UTR
chr992,250,58592,250,6588.9254.924-IARS1ENSG00000196305.185' splice site
chr9136,376,749136,376,8458.8743.289-SNAPC4ENSG00000165684.4Proximal intron
chr9137,457,314137,457,3858.8743.289-NSMFENSG00000165802.235' splice site
chr9120,433,994120,434,1198.7384.056-CDK5RAP2ENSG00000136861.18Distal intron
chr992,714,73892,714,7948.6864.896-BICD2ENSG00000185963.143' UTR
chr992,714,02392,714,1088.6783.569-BICD2ENSG00000185963.143' UTR
chr996,777,90496,778,0228.2164.808-ZNF510ENSG00000081386.125' UTR
chr935,092,37235,092,4488.0063.471-PIGOENSG00000165282.14CDS
chr9124,389,810124,389,9887.9934.778-PSMB7ENSG00000136930.13Distal intron
chr9136,432,217136,432,3307.9923.496-INPP5EENSG00000148384.14Proximal intron
chr9129,924,182129,924,3097.8433.924-FNBP1ENSG00000187239.17Proximal intron
chr991,925,45291,925,6357.7614.747-ROR2ENSG00000169071.15Distal intron
chr9129,010,386129,010,4277.6093.867-SH3GLB2ENSG00000148341.18Proximal intron
chr992,713,53692,713,5867.2784.649-BICD2ENSG00000185963.143' UTR
chr938,548,61538,548,7237.1773.808-FAM95C|AL390726.2ENSG00000272904.1||ENSG00000283486.2Distal intron (ncRNA)
chr992,714,99592,715,0527.1773.808-BICD2ENSG00000185963.143' UTR
chr9133,368,675133,368,7727.0604.615-SURF4ENSG00000148248.14Distal intron
chr992,714,87192,714,9257.0604.615-BICD2ENSG00000185963.143' UTR
chr9128,820,572128,820,6446.9223.311-SPOUT1|AL441992.2ENSG00000286112.1||ENSG00000198917.133' UTR
chr9128,820,689128,820,7546.7233.004-SPOUT1|AL441992.2ENSG00000198917.13||ENSG00000286112.13' UTR
chr992,713,79592,713,8536.4923.253-BICD2ENSG00000185963.143' UTR
chr9129,924,439129,924,5276.2833.649-FNBP1ENSG00000187239.17Proximal intron
chr9127,890,251127,890,3826.1294.433-ST6GALNAC6ENSG00000160408.14Proximal intron
chr9137,008,271137,008,3496.0553.162-ABCA2ENSG00000107331.175' splice site
chr992,714,79492,714,8506.0333.193-BICD2ENSG00000185963.143' UTR
chr996,777,78496,777,8795.8483.130-ZNF510ENSG00000081386.125' UTR
chr9137,575,057137,575,1315.6053.508-DPH7ENSG00000148399.13Proximal intron
chr9101,473,550101,473,7055.4434.311-PGAP4ENSG00000165152.93' UTR
chr9132,598,179132,598,3915.4143.064-DDX31ENSG00000125485.17Distal intron
chr9129,011,242129,011,2765.4143.064-SH3GLB2ENSG00000148341.18Distal intron
chr9136,084,174136,084,2975.3953.471-NACC2ENSG00000148411.8Distal intron
chr9137,009,066137,009,1335.3953.471-ABCA2ENSG00000107331.173' splice site
chr9128,820,535128,820,5725.1974.267-SPOUT1|AL441992.2ENSG00000198917.13||ENSG00000286112.13' UTR
chr935,091,91135,091,9865.1873.030-PIGOENSG00000165282.14CDS
chr9137,023,641137,023,6984.9854.177-ABCA2ENSG00000107331.17Proximal intron
chr9129,011,979129,012,0004.9543.393-SH3GLB2ENSG00000148341.18Proximal intron
chr9136,444,057136,444,2054.7233.352-SEC16AENSG00000148396.18Proximal intron
chr935,091,83535,091,8944.7233.352-PIGOENSG00000165282.14CDS
chr9128,635,482128,635,5414.5163.267-WDR34ENSG00000119333.11Proximal intron
chr978,020,37978,020,5054.4853.311-GNAQENSG00000156052.11Distal intron
chr9128,821,620128,821,6614.4853.311-SPOUT1|AL441992.2ENSG00000198917.13||ENSG00000286112.13' UTR
chr983,974,69683,974,7384.3043.223-HNRNPKENSG00000165119.21Proximal intron
chr934,259,45334,259,5584.2934.030-KIF24ENSG00000186638.165' splice site
chr9135,500,378135,500,4524.2934.030-C9orf116ENSG00000160345.135' UTR
chr9120,434,220120,434,2904.0863.177-CDK5RAP2ENSG00000136861.18Distal intron
chr996,416,83396,416,8914.0863.177-AL133477.1ENSG00000286835.1Noncoding exon
chr9109,039,424109,039,5474.0673.924-TMEM245ENSG00000106771.13Distal intron
chr9133,342,172133,342,2024.0673.924-MED22ENSG00000148297.163' UTR
chr9133,369,033133,369,1164.0463.978-SURF4ENSG00000148248.14Distal intron
chr9124,708,824124,708,9014.0463.978-NR6A1ENSG00000148200.17Distal intron
chr9133,955,335133,955,3924.0463.978-VAV2ENSG00000160293.17Distal intron
chr938,542,80838,542,9413.6503.030-FAM95CENSG00000283486.2Noncoding exon
chr9136,444,298136,444,3943.6503.030-SEC16AENSG00000148396.18Proximal intron
chr9134,054,994134,055,0733.6503.030-BRD3ENSG00000169925.17Distal intron
chr9120,434,576120,434,6623.6303.081-CDK5RAP2ENSG00000136861.18Distal intron
chr9133,375,275133,375,3473.6253.808-SURF4ENSG00000148248.145' UTR
chr9134,041,493134,041,5593.3923.747-BRD3ENSG00000169925.17Proximal intron
chr9132,067,626132,067,6893.3923.747-MED27ENSG00000160563.14Distal intron
chr9127,890,499127,890,5573.3923.747-ST6GALNAC6ENSG00000160408.145' splice site
chr9137,023,960137,023,9943.3923.747-ABCA2ENSG00000107331.17Proximal intron
chr914,640,66614,640,8253.1583.615-ZDHHC21ENSG00000175893.11Distal intron
chr9127,890,173127,890,2513.1583.615-ST6GALNAC6ENSG00000160408.14Proximal intron
chr9133,343,578133,343,6293.1523.683-MED22ENSG00000148297.163' UTR
chr9128,820,932128,820,9433.1523.683-AL441992.2|SPOUT1ENSG00000198917.13||ENSG00000286112.13' UTR
chr5139,278,792139,278,83934.3013.327+SNORA74AENSG00000200959.1Noncoding exon
chr5141,936,899141,937,23524.3754.818+DELE1ENSG00000081791.9CDS
chr5139,278,839139,278,85217.9484.937+SNORA74AENSG00000200959.1Noncoding exon
chr5139,278,781139,278,78516.7883.402+SNORA74AENSG00000200959.1Noncoding exon
chr5139,278,778139,278,78115.4513.187+SNORA74AENSG00000200959.1Noncoding exon
chr5177,429,246177,429,36514.0293.878+GRK6ENSG00000198055.11Distal intron
chr5172,835,090172,835,2289.8555.056+ERGIC1ENSG00000113719.16Distal intron
chr514,348,87514,349,0078.9254.924+TRIOENSG00000038382.20Distal intron
chr514,348,65114,348,7348.0763.951+TRIOENSG00000038382.20Distal intron
chr5151,449,939151,450,0677.9934.778+SLC36A1ENSG00000123643.13Distal intron
chr537,684,77137,684,9017.3973.838+WDR70ENSG00000082068.9Distal intron
chr56,715,6026,715,6867.3573.393+TENT4AENSG00000112941.14Proximal intron
chr5123,170,158123,170,2947.1263.366+PRDM6ENSG00000061455.11Proximal intron
chr5177,428,772177,428,8457.1263.366+GRK6ENSG00000198055.11Distal intron
chr5149,733,013149,733,1176.9223.311+hsa-mir-378aMI0000786miRNA proximal
chr5177,429,060177,429,1096.4973.683+GRK6ENSG00000198055.11Distal intron
chr5176,368,730176,368,8166.4713.715+ARL10ENSG00000175414.7CDS
chr5149,733,374149,733,4606.4713.715+hsa-mir-378aMI0000786miRNA proximal
chr514,349,27314,349,3506.2833.649+TRIOENSG00000038382.20Distal intron